Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq148 172 1e-37 seq16 150 4e-31 seq39 132 9e-26 seq126 129 1e-24 seq40 125 1e-23 seq35 114 3e-20 seq15 104 5e-17 seq90 87.8 4e-12 seq158 86.0 1e-11 >seq148 Length=4887613 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||||| || || || | |||||||||||| |||||||| || || || ||||| Sbjct 4050774 CCACCTCTCAGGCGAAGGACCAGGTGCAGAGTAGACTCTTTCTGGATGTTGTAGTCAGAA 4050833 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || ||||| || |||||||| || || || || || ||||| Sbjct 4050834 AGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGG 4050893 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || ||||| || || ||||| ||||| |||||| | ||||| ||| Sbjct 4050894 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTGGGTTCCACT 4050953 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || | || || |||||||| |||| ||||| || || || |||||| Sbjct 4050954 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATT 4051001 >seq16 Length=31725842 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || || || || || || |||||||| | | | | || ||||| ||||| Sbjct 21647049 TGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATCTTCCAGTTGC 21647108 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || ||||| ||||| ||||| |||||||||||||| || ||||| Sbjct 21647109 TTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTG 21647168 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 |||||||||||||| || || || ||||| || || | || || ||||| || || Sbjct 21647169 GCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTA 21647228 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | || |||||||| |||||||| Sbjct 21647229 AGAGTTTTTACAAAAATCTGCAT 21647251 >seq39 Length=21454635 Score = 132 bits (146), Expect = 9e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 || || || || || |||||||| | | | | || ||||| ||||| || ||||||||| Sbjct 17272269 TCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCATCTTCCAGTTGCTTACCAGCAAAG 17272210 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 || || ||||| ||||| |||| |||||||||||||| || ||||| |||||||||||| Sbjct 17272209 ATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTT 17272150 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACA 82799 || | || || | ||||| || || | || || ||||| | | || || ||||| Sbjct 17272149 TCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATGGTCTTCTCCATAAAGGTTTTTACG 17272090 Query 82800 AATATCTGCAT 82810 || |||||||| Sbjct 17272089 AAAATCTGCAT 17272079 >seq126 Length=6421402 Score = 129 bits (142), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || || || || || ||||| || | | | | || | ||| ||||| || |||||| Sbjct 2409845 GACTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCA 2409904 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 ||||| || | ||| ||||| ||||| |||||||||||||| || ||||| ||||||||| Sbjct 2409905 AAGATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACA 2409964 Query 82737 TTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTT 82796 ||||| || || || ||||| | || | || || ||||| ||||| | || ||| Sbjct 2409965 TTTTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTT 2410024 Query 82797 ACAAATATCTGCAT 82810 || || |||||||| Sbjct 2410025 ACGAAAATCTGCAT 2410038 >seq40 Length=22651954 Score = 125 bits (138), Expect = 1e-23 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| || || || |||| |||||| ||||| ||| | || || || ||||| Sbjct 7366486 CCACCTCGCAGGCGAAGCACTAGGTGCAGGGTAGACTCT----GGATGTTGTAGTCAGAG 7366541 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| ||| || || || || ||||| || ||||| || || | || || || || || Sbjct 7366542 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGG 7366601 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||| || || ||||| ||||| || || || ||| | || || || Sbjct 7366602 ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACC 7366661 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||||||||||| ||||| || || |||||||| Sbjct 7366662 TCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq35 Length=22943593 Score = 114 bits (126), Expect = 3e-20 Identities = 144/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 82617 GATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCA 82676 || || || || || || |||||||| | | || ||||| | ||| || |||||| Sbjct 21587369 GACTCCTTTTGAATGTTGTAATCAGACAAAGCATGTCCATCTTCCACTTGCTTACCAGCA 21587310 Query 82677 AAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACA 82736 || || || |||| ||||| ||||| |||||||||||||| || ||||| || | |||| Sbjct 21587309 AATATCAGCTTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTCTACA 21587250 Query 82737 TTTTCAATCGTATCATTAG-GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTT 82795 ||||| || ||||| | || |||| || || | ||| || ||||| | || | || || Sbjct 21587249 TTTTCTATAGTATC-TGAGAGTTCAACCTCAAGAGTGATGGTCTTCCTTGCAAGAGTTTT 21587191 Query 82796 TACAAATATCTGCAT 82810 |||||| ||||| || Sbjct 21587190 TACAAAAATCTGTAT 21587176 >seq15 Length=34776858 Score = 104 bits (114), Expect = 5e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| |||| | | || || | ||||| || || || ||||| || | || |||| Sbjct 23700265 TACCTCCCCTCAGATGGAGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAG 23700324 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || | |||||||| || || || || | ||| | Sbjct 23700325 ACAGGGTGCGTCCATCTTCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGT-TGGGG 23700383 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || | ||||| ||||| ||||| || || ||||| | ||| || ||| | ||||||| Sbjct 23700384 GGATGCTCTCCTTGTCTTGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTA 23700443 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || | ||||| || | ||||| | || || ||||| Sbjct 23700444 CTTCGAGGGTGATGATGTTGCCAGTAAGGGTCTTCATGAAGATTTGCAT 23700492 >seq90 Length=10032467 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 60149 GCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATA 60208 || || |||||||| | | |||||||||| | || || || || ||||||||||| || Sbjct 6578121 GCTTTGTGGTGGTATTTTGTATCTAAAGGAGTTGAGTATTTGGACACGGTGTTTTTTATC 6578062 Query 60209 CTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTT 60268 || ||||| || | || ||| ||| || ||||| |||||||| | || ||||| Sbjct 6578061 CTGAGGAAGAAAAACAGCCAAGTTTCTTTCTTGCACGTGTATCATCACTGCACCATGTTC 6578002 Query 60269 ACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 || | | ||| | || ||||| ||| |||| || || |||| Sbjct 6578001 ACACTGTGGTGGATTGGAATTAAGTGGGTTGCGGGGGGACAAG 6577959 >seq158 Length=4392130 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| ||||| || |||||||| | |||||||| ||||| |||| ||| ||||||| Sbjct 4121728 GTCTTCCAGTTGCTTCCCAGCAAATGTCAGTCTTTGCTGATCAAGAGGAATTTCTTCCTT 4121669 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTAT 82749 || |||| || || ||||||||||| ||| ||| Sbjct 4121668 ATTCGGAATGTTGGCCTTTACATTTTCTATCATAT 4121634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981774000613631