Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq148 138 1e-27 seq40 122 8e-23 seq117 102 8e-17 seq22 98.7 1e-15 seq12 98.7 1e-15 seq16 89.7 5e-13 seq3 82.4 7e-11 >seq148 Length=4887613 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| ||||||||||| | ||| | | | || || ||||||||||| Sbjct 4050576 GTGGACTCTTTCTGGATATTGTAATCAGAAAGAGTGCGGCCA-TCTTCAAGCTGCTTGCC 4050634 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| |||||||||||||||||||||||| || || |||||| ||| Sbjct 4050635 TGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 4050694 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 4050695 TACATTCTCAATGGTATCACTGGGTTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGT 4050754 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4050755 CTTCACAAAGATCTGCAT 4050772 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| |||||||| || | ||| | | | || || |||||||| || Sbjct 4050348 GTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTCCC 4050406 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 4050407 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 4050466 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || | |||||||| || | ||||| ||| ||||| ||||| || Sbjct 4050467 CACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 4050526 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4050527 CTTCACAAAGATCTGCAT 4050544 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | ||| | | | || || ||||| ||||| Sbjct 4050804 GTAGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCAAGCTGTTTGCC 4050862 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||||| ||||||||| |||||||||||||| || || |||||| ||| Sbjct 4050863 TGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 4050922 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| ||||| || | ||||| ||| ||||| ||||| || Sbjct 4050923 CACATTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGT 4050982 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 4050983 CTTCACGAAAATTTGCAT 4051000 >seq40 Length=22651954 Score = 122 bits (134), Expect = 8e-23 Identities = 122/156 (78%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||||| || | || || ||||||||||| || |||||||| |||||| Sbjct 7366554 TCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 7366613 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | ||| | ||||| |||||||||| |||| ||||| Sbjct 7366614 TCTTGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGAT 7366672 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || || ||||| |||||||| Sbjct 7366673 GGTCTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq117 Length=6347111 Score = 102 bits (112), Expect = 8e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || | ||| | | | || || ||||||||||| Sbjct 1554178 GTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCA-TCTTCCAGCTGCTTGCC 1554120 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 | | ||||||| ||| ||||| |||||||||||||| || || |||||| ||| Sbjct 1554119 TGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTT 1554060 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| || || |||| ||||| || | |||| ||| ||||| ||||| || Sbjct 1554059 TACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTCTTGCCAGTCAGGGT 1554000 Query 133643 TTTTACGAAAATCTGCAT 133660 || | ||| || ||||| Sbjct 1553999 CTTCATGAAGATTTGCAT 1553982 >seq22 Length=29172479 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||| | || | || || ||||||||||| || |||||||| |||||| Sbjct 11894417 TCCTCCAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTG 11894476 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| || |||| | || ||||| |||||||||| |||| ||||| Sbjct 11894477 TCTTGGAT-TTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGAT 11894535 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| || || | ||| |||||||| Sbjct 11894536 GGCCTTGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq12 Length=34595640 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| | ||||| || | | | | | | ||||| ||||| ||| Sbjct 22518566 GGTAGACTCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCA-TCCTCCAGCTGTCTGC 22518508 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || || ||||||||||| || |||||||| |||||||| ||| ||| ||| Sbjct 22518507 CGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCT 22518449 Query 133582 -TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 ||| | || | ||||| || ||||||| |||| ||||| ||| ||||| ||||| Sbjct 22518448 CTGACATTCTTGATGGTGTCACTGAGCTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGG 22518389 Query 133641 GTTTTTACGAAAATCTGCAT 133660 | | ||||| |||||||| Sbjct 22518388 ATCCTCACGAAGATCTGCAT 22518369 >seq16 Length=31725842 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516 ||| | ||||||||| || || || |||||||| || || || || || || Sbjct 21647048 ATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATCTTCCAGTTG 21647107 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 ||| || || | || |||| ||||| || ||||| || |||||||| || |||||| Sbjct 21647108 CTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 21647167 Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || | | || | ||||| | ||| || || |||| |||| ||| || || || Sbjct 21647168 GGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 21647227 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 ||||||||||| ||||||||||| Sbjct 21647228 AAGAGTTTTTACAAAAATCTGCAT 21647251 >seq3 Length=47073470 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCG 133524 ||||||||||||| || ||| | || | ||| ||||||| || ||| | Sbjct 10446390 TGGACTCTTTCTGGATGTTGAAGTCAGAGAAGGTGCTGCAGTCCTCCGTCTTTTTGTTAG 10446331 Query 133525 CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGA 133584 | | || || | |||||||| | |||||||| |||||||| ||| ||| |||| | Sbjct 10446330 CAAATATCAGATGTTGCTGGTCAGAGGGGATGCCGTCCTTGTCTTGGAT-TTTGGCTTTA 10446272 Query 133585 GC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| |||| |||||| ||| || | ||||| ||| ||||| ||||| || Sbjct 10446271 ACATTCTCAATGGTGTTACTGGGCTTCACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTC 10446212 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| |||| ||| Sbjct 10446211 TTCACGAAGATCTACAT 10446195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483395245167960