Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-47 seq82 196 6e-45 seq81 143 3e-29 >seq2 Length=46765855 Score = 203 bits (224), Expect = 4e-47 Identities = 242/326 (74%), Gaps = 2/326 (1%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || || || || || ||||| ||||| || | || Sbjct 36241109 CATAGAGGGTAAGGCAGGCTGTTCCTGAGATCTTCCCAGAGCCAAAGGTATTGAAGAGAC 36241168 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTG- 171889 |||| |||| ||||| ||||||| || |||||||| || || |||| |||| || Sbjct 36241169 ACATGTAACACCCTTCATCCTCCAGTGTTGTGTTCCAGAAGGT-AATGGCTGATTTGTGG 36241227 Query 171890 AGTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGA 171949 | ||| || | || ||||| |||| |||||| || | ||||||||| ||||| || || Sbjct 36241228 AATCCCAGCTCAGTGATGTTTACCCTGTCCTTATAGGCAGGCTGGACCACAACCCCATGG 36241287 Query 171950 TTCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACT 172009 ||||| ||| | ||| |||||||||| ||||| |||||| | |||||||| || || Sbjct 36241288 TTCTCACTGTAGGTGACCATGTTTTCTGGGCTTACAGCCTTCTTTTTCTGCCATGTCACA 36241347 Query 172010 ATTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAAT 172069 ||||| | ||| | | ||||| ||||| |||||||| || ||||||||||||| | Sbjct 36241348 ATTAAGATTTCCTGGGAAGTTTGCAGAGAACATCTTAAGGATGCAGGTGTGTTCAGCAGC 36241407 Query 172070 TCCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 36241408 TTTCTTTCATCCTGGGTCACCACTTG 36241433 Score = 136 bits (150), Expect = 5e-27 Identities = 166/226 (73%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 171524 ACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTTCCCACTTGACTTTTAGGA 171583 ||||| |||||||| | ||| | ||| ||||||||| | || || ||||| || | | Sbjct 36238570 ACAGTTCCCAAGTGCAGGACCTGGCAGGTCACCTCCT---TCCCAACCTGACTCTTGGCA 36238626 Query 171584 TCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTACGATGTAGAACGGTTTTA 171643 ||||| || | || |||||||| |||||||| ||||| ||| |||| | || | | | Sbjct 36238627 TCTTTGACCCGTAGGATGCTAGTGACAGATGTGGTCCCATTATGATGCAAAATACTCTCA 36238686 Query 171644 GTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATATAACAGGAGCTGGTCTAGCA 171703 |||||||| || || || || || || ||||| | || ||||| ||||| | ||| Sbjct 36238687 GTACTATTCTCAATCCCTGACCCACTGACCTTCCAGGAGATCACAGGTGCTGGGCGGGCA 36238746 Query 171704 GTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAACTCATAGT 171749 || ||||||||||| ||||||| | ||||| ||||| | |||| Sbjct 36238747 GTGGCAGAGCAAGTGATGTTTAGTTGGTCTTCAAAGAAATTGTAGT 36238792 >seq82 Length=11338420 Score = 196 bits (216), Expect = 6e-45 Identities = 609/932 (65%), Gaps = 17/932 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || || || || Sbjct 3970567 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGACATCGACATCAA 3970508 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAA-TTAAGATCCCCC 162177 |||||||||| || || || | ||| || | | | || ||| | ||||| || || Sbjct 3970507 CATCGAACTTATTGGCAAAAAAGTGGTGTTTG--CGT-AACATCGAGGTTAAG-TCACCA 3970452 Query 162178 GATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCA 162237 | ||| || || |||||| ||||| || || || || || ||||| | || || Sbjct 3970451 GCTCCAAAAACACACACGCTGCGCACATGGACACCATCACAGGGTGGATAGGGTGCGCCC 3970392 Query 162238 TCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCG 162297 | || ||||| || || ||||||||||||| || ||||| | | |||||||||||| Sbjct 3970391 TTGTTAACATCACCTTCAAAGTATTGCCACTTGACAAACCTGGCAACAGCCTGCATGTCA 3970332 Query 162298 GAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 || ||| ||||||| | || | | || || | | || | || || | Sbjct 3970331 GACAGGTCATACTTGTGGCTCAAGGGTAGAGAGCCCGGGGCCTCGGGGATCCTTTGGATG 3970272 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || ||||| || |||| |||||||||||||| | | Sbjct 3970271 GTGGCCCAGAGATACTCATCTGGGCTGTACGTGTCTTTCGCCCACTCCATGAACTTCTGG 3970212 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | || || | ||| | ||| || || ||| | || | ||| || || || Sbjct 3970211 ATGTCTTCATTTTCTAGCACGTAGCCCACATACTCCCTACTGACCACAAAATAGGCACTG 3970152 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || || || | ||| | | |||||| | |||| | | |||| | || | Sbjct 3970151 CCTGAGAAAAGAGGTGTTTTGAGAGGAGGCTGTGTTTTGGGGTTCCTGGTGTCCATTAGC 3970092 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGG--- 162594 |||| || | || | | || ||||||| | ||| || ||| || Sbjct 3970091 CTTCCATCGATGATTTCATAATGTTTTTTCCACCTTTCTGCTTTA-TG--AGATGGCATC 3970035 Query 162595 TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 | || || || || |||| |||| || | ||| |||| | || || || || Sbjct 3970034 TTCTCTGTTTCCAGGTTGTTTTCACCCATGAACGACTTGAGCTTCCTGACAATTTCCAGG 3969975 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | || || ||||| || | || ||||||| ||| Sbjct 3969974 TTGGTTTTAATAGGAAAATCCATCCCACAAAGATTGATCAAGTACTTCCACTCTGTGCTC 3969915 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 || ||| || |||| | ||||| || || ||||| || ||||||||||| || || Sbjct 3969914 CTTCTGTAGAGGTCCTTCATGCAGTTGAGGTCAGCCTGAACTCGACTCCACGAAGCATAG 3969855 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || ||||||| | | |||| ||||||||||| |||||| || | || ||| || Sbjct 3969854 ACCACACTCTCCAGCTGACTGGCCACAAAGACATTCCTGAAACAGGATGCAATGCCCTTC 3969795 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 || | ||| | || | | |||| | ||| || || || || | |||||| | |||| Sbjct 3969794 ACTG-CAGCTATAAAA--GAGTCCTCTGATTTTCTGTCCACATGGATGCAGTAGAAATTC 3969738 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| || |||||||| || | || || | ||| || || ||||| || ||||| Sbjct 3969737 TGAGGCATATAAATGGCCCTTAGGAGCCTGTCAAGCATTTCAATTTTATGATGAACCACT 3969678 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| || || ||||| | |||||||| Sbjct 3969677 ATGGAATATGCAATTGGGAAGCCTGCCTCCTC 3969646 >seq81 Length=11709477 Score = 143 bits (158), Expect = 3e-29 Identities = 449/682 (66%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || |||| | | Sbjct 9155007 TCCAGTTAAAGTAACTAAGGTATAATTTATTGTTTTTGTCGACTTCCTTTAGGTACTTTG 9155066 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 9155067 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 9155126 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| | || Sbjct 9155127 TCTCATAGTTTTCCCTGGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAAGAAAGCAT 9155186 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 ||||| ||||| || || || || |||| | || || ||||| | |||||| |||| Sbjct 9155187 TATAGAGCTTTTCTGTTATGTAATCTTTGTGGATTGAATTTTCAAAAGAGAGATAAAATT 9155246 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || |||| | ||| | ||| ||||| | | | | Sbjct 9155247 TACAAGCAGATATGGTA--GGAATCAAGTTCTTATCATTCACATACTCTCCGAATGCTTG 9155304 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || ||||| ||| || || || || | | Sbjct 9155305 CCCATAGGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 9155363 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || |||||||| |||||||| || || Sbjct 9155364 GCTCAGGGTTCCAGTTACTTACAACCCAACACACTAACTT-CTCTTTGCTTGGCAC---- 9155418 Query 177303 TTC-GATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCG 177360 ||| | || |||| || | | || | || | | ||||| ||||| || ||||| | Sbjct 9155419 TTCAAACACGAATG-GGTTTGTGCTTACTGTCAAGAAGCCATAAGGCACTTGGATATCTG 9155477 Query 177361 AGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGG 177418 |||| || | ||| |||| || | ||||| |||| || || | || |||| ||| Sbjct 9155478 AGTCACGGCGGTAGGTTAGAGTCAAGTTGAACAGGTGCTCAATTCCACTCTTTTG--GGG 9155535 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | || ||||| || |||||||| ||||| ||||| |||| ||| || | || Sbjct 9155536 AGTATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTTTGGAAGGGTGGCCTAGCTTG 9155595 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | | |||| ||| || |||| ||| || | | || |||| | Sbjct 9155596 CTGAGGTAAATTGGTCAGATCCCAACTGATGTCTCGGTGATGTATCAAGACTGCATGTGA 9155655 Query 177539 TTTGTAATAAACAGATCTGTCT 177560 ||||| ||| | || | |||| Sbjct 9155656 TTTGTTATACAATGAACGGTCT 9155677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578401422638400