Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq16 114 3e-20 seq148 96.9 8e-15 seq39 93.3 1e-13 seq117 89.7 1e-12 seq41 89.7 1e-12 >seq16 Length=31725842 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || ||||| | || || ||| || ||| Sbjct 21647248 CAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCAGAC 21647189 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| ||||| ||||| || || || ||||||||| || || ||| Sbjct 21647188 ACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAA 21647129 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || ||||| ||||||||||| | |||||| | ||||||||| | Sbjct 21647128 AGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTACAACATT 21647069 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || || ||||| || ||||| ||||| |||||| Sbjct 21647068 CAAAAGGAGTCCACCCTTCATCTTGTGTTGAGA 21647036 Score = 86.0 bits (94), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 204757 TCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCC 204816 |||||| ||||| ||||| || ||||| || || | || || |||| |||||| | ||| Sbjct 21647036 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCC 21647095 Query 204817 ATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||| ||||| || || ||||| |||| ||| ||| Sbjct 21647096 ATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGA 21647135 >seq148 Length=4887613 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| ||||||||||| ||| Sbjct 4050769 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAACCCAGTGAT 4050710 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || |||||| ||||| || || |||||||| || || ||| || Sbjct 4050709 ACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAG 4050650 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||| || || |||||| | |||||||| | ||| | | |||||||| || Sbjct 4050649 AGGCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTTTCTGATTACAATATC 4050590 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 4050589 CAGAAAGAGTCCACTCTGCACCTGGT 4050564 Score = 86.0 bits (94), Expect = 1e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 |||||||| ||||| ||||| ||||||| ||| ||||||| | ||| | ||||||||| Sbjct 4050336 ACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCC 4050395 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||||| || || ||||| |||| Sbjct 4050396 AGCTGCTTCCCTGCAAAGATGAGCC 4050420 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | ||||||||| ||| || | || Sbjct 4050985 AAGACCCTGACTGGCAAGACCATCACCCTAGAAGTGGAACCCAGTGATACCATTGAGAAT 4050926 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 4050925 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTCATCTTT 4050866 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | |||||||| | ||| | | || |||||| |||||||||||||| Sbjct 4050865 GCAGGCAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCT 4050806 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 4050805 ACTCTGCACCTGGT 4050792 >seq39 Length=21454635 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||||||| | || ||||| || ||||| || || ||| Sbjct 17272163 AAGATCCAGGATAAGGAAGGAATTCCTCTTGATCAGCAAAGGCTGATCTTTGCTGGTAAG 17272222 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || ||||||||||| | |||||| | ||||||||| | || || |||| || ||||| Sbjct 17272223 CAACTGGAAGATGGACGTACTTTGTCTGATTACAACATTCAAAAGGAGTTCACCCTTCAT 17272282 Query 206374 CTTGTTTTGAGACT 206387 ||||| |||||||| Sbjct 17272283 CTTGTGTTGAGACT 17272296 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 |||||||| ||||| ||||| || |||| || || | || || |||| |||||| | | Sbjct 17272296 AGTCTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGT 17272237 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 ||||||||||| ||||| || || ||||| |||| ||| ||| Sbjct 17272236 CCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGA 17272195 >seq117 Length=6347111 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| ||||||||||| ||| || | || Sbjct 1553997 AAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAACCCAGTGATACCATTGAGAAT 1554056 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 1554057 GTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCACCAGAGGCTCATCTTT 1554116 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || |||||| |||||||||| ||| | | || |||||| | ||||| ||||| Sbjct 1554117 ACAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGACTACAACATTCAGAAGGAGTCC 1554176 Query 206365 ACTCTTCACCTTGT 206378 ||||| |||||||| Sbjct 1554177 ACTCTGCACCTTGT 1554190 >seq41 Length=20498451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| || || ||||| ||||||| ||| ||||||| || || | |||||||||| Sbjct 848204 ACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCATCCATCTTCC 848263 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||| ||||| |||| ||||| Sbjct 848264 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTG 848295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181756764147909