Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq16 98.7 9e-16 seq88 95.1 1e-14 seq148 93.3 4e-14 >seq16 Length=31725842 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| || | ||| || | ||| | | | ||||| |||||||||||||| || || || Sbjct 21647030 ACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGT 21647089 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| || || ||||| | | |||| || | || ||||| ||||| || || Sbjct 21647090 ACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCC 21647149 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| ||||| || || ||| | | ||| | ||| || | || || || |||| Sbjct 21647150 TTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAG 21647209 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || || |||||||||| ||||||||||| Sbjct 21647210 CGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq88 Length=9715273 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||| ||| Sbjct 5552717 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTGGTTG 5552658 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 || |||||||| || | |||||| ||||||||||||| ||| ||||| Sbjct 5552657 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCTGTCTC 5552608 >seq148 Length=4887613 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | || || |||||| |||||||| || | | Sbjct 4050807 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCAAGCTGTTTGCCTGCA 4050866 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 4050867 AAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 4050926 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | || |||||||| | || | || || |||||||| || || Sbjct 4050927 TTCTCAATGGTATCACTGGGTTCCACTTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4050986 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 4050987 ACGAAAATTTGCAT 4051000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476586005140440