Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_026016.1 Length=43748 Score E Sequences producing significant alignments: (Bits) Value seq371 206 7e-49 >seq371 Length=40469 Score = 206 bits (228), Expect = 7e-49 Identities = 262/361 (73%), Gaps = 6/361 (2%) Strand=Plus/Plus Query 14131 TTAACATTGAATAAGTTTGTGCCCCGTTGTATACTTTTGAGCCTTTAGGTAAATAAGCCG 14190 ||||||||| || || || || || ||||| || | || |||| || | ||| || | Sbjct 28257 TTAACATTGCATGTGTCTGCGCGCCATTGTAGACAGTAGAACCTTGTGGAAGATATGCTG 28316 Query 14191 TAGTATCTGTATTTGGTGTGATTACACGTTTACCATTAGGGAATTCAATCATTTCATTTC 14250 | |||||| | || ||||||||| || |||||| || || | ||||||||||| || Sbjct 28317 TTGTATCTCTGTTAGGTGTGATTGCAGTTTTACCGTTTGGATAACGAATCATTTCATGTC 28376 Query 14251 TGAAACCATTTGGACCATTTCCGCATCCCTTATCCCCAACTGTAGCGAATGTGTCACGTG 14310 ||||||| |||||||| || || |||| || || || ||||||||||| | Sbjct 28377 GGAAACCACCGGGACCATTACCTTTACCTCTATCGCCCACAGTTGCGAATGTGTCTTTAG 28436 Query 14311 CAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTATGTTCAGTACCAGTGTGTA 14370 ||||||||||||| ||||| | | ||||| |||| |||||||||||||| ||||||| Sbjct 28437 CAATCTTACCGTTTTTAACAACGTTAGTAGTCGTATTAGTATGTTCAGTACCTGTGTGTA 28496 Query 14371 AC------TTCGGTATTTTGTCCATACCCAACTTACCACCGACCCAGTTTAAACCTTCAA 14424 || || |||| ||||||||| || | || || | |||||||| | |||||| | Sbjct 28497 ACTTGATTTTAGGTAGTTTGTCCATTCCAAGTTTTCCTGCTACCCAGTTAACACCTTCGA 28556 Query 14425 TTAATTTATTAAGACCTCTTTTAACAGCGTCTACCATACCACCGATATGATCTTTAATTT 14484 | | ||| || || || ||||| || |||||||| ||| || ||| |||||||| Sbjct 28557 TAAGTTTGTTTAGTCCACTTTTTACTTTATCTACCATGCCAGTTATGTGACTTTTAATTT 28616 Query 14485 T 14485 | Sbjct 28617 T 28617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139864975715580