Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq16 107 2e-18 seq39 82.4 7e-11 >seq16 Length=31725842 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||||||||| | || || || | |||||| |||| || ||| | Sbjct 21647255 CAAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACC 21647196 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | || ||||| || | |||||| || || ||||| || || || || || || Sbjct 21647195 CTCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 21647136 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||||| || || | | || || ||||| ||||||| | | | | ||||| Sbjct 21647135 TCAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTA 21647076 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATT 25392 ||| |||||||| || |||||| ||||| | ||||| ||||| Sbjct 21647075 CAACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATT 21647034 >seq39 Length=21454635 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | || |||||||| || | | || | |||||| |||| || ||| | Sbjct 17272075 CAAGATGCAGATTTTCGTAAAAACCTTTATGGAGAAGACCATCACGCTCGAGGTTGAACC 17272134 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | | || || | || | |||||| || || ||||| || || || || | || Sbjct 17272135 CTAGGACACAACAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCTTGA 17272194 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||||||| || || | | || || ||||| ||||||| | | | | ||||| Sbjct 17272195 TCAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGATTA 17272254 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGA 25390 ||| |||||||| || | |||| ||||| | ||||| ||| Sbjct 17272255 CAACATTCAAAAGGAGTTCACCCTTCATCTTGTGTTGAGA 17272294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445070871197280