Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq41 183 4e-41 seq17 183 4e-41 seq1 143 3e-29 seq78 136 5e-27 >seq2 Length=46765855 Score = 230 bits (254), Expect = 3e-55 Identities = 244/322 (76%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || |||||||||||| || || ||| | | ||| || Sbjct 36241433 CAAGTGGTGACCCAGGATGAAAGAAAGCTGCTGAACACACCTGCATCCTTAAGATGTTCT 36241374 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| ||||| ||||| | | ||||| || |||||||||| ||| | | ||| Sbjct 36241373 CTGCAAACTTCCCAGGAAATCTTAATTGTGACATGGCAGAAAAAGAAGGCTGTAAGCCCA 36241314 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || | || | |||| ||||| ||||||||||| || ||||||||| Sbjct 36241313 GAAAACATGGTCACCTACAGTGAGAACCATGGGGTTGTGGTCCAGCCTGCCTATAAGGAC 36241254 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 | | |||||||||| |||| ||| |||| || ||| |||| || || ||||| || || Sbjct 36241253 AGGGTAAACATCACTGAGCTGGGATTCCACAAATCAGCCATTACCTTCTGGAACACAACA 36241194 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 36241193 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGCTCTGGGAAGATCTCA 36241134 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || |||||||| ||||||| Sbjct 36241133 GGAACAGCCTGCCTTACCCTCT 36241112 Score = 143 bits (158), Expect = 3e-29 Identities = 198/277 (71%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || ||||||| || || || | || || || ||||| ||||| || |||||||| || Sbjct 36238814 GTACAGCCCATAGTATTCCTTGACTACAATTTCTTTGAAGACCAACTAAACATCACTTGC 36238755 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| ||||| ||| | |||||| | ||||||| ||||| Sbjct 36238754 TCTGCCACTGCCCGCCCAGCACCTGTGATCTCCTGGAAGGTCAGTGGGTCAGGGATTGAG 36238695 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 || |||| ||| | ||| ||| |||||| || || ||||| || || | || | Sbjct 36238694 AATAGTACTGAGAGTATTTTGCATCATAATGGGACCACATCTGTCACTAGCATCCTACGG 36238635 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 || ||||| ||||||||||| | || |||||||| | |||||| || |||| ||||| Sbjct 36238634 GTCAAAGATGCCAAGAGTCAGGTTGGGAAGGAGGTGACCTGCCAGGTCCTGCACTTGGGA 36238575 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| | | ||| | | | ||| | | ||| |||| Sbjct 36238574 ACTGTGATTGACTACAAGAAGACTCTGAACAAAGGTA 36238538 >seq41 Length=20498451 Score = 183 bits (202), Expect = 4e-41 Identities = 137/161 (85%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 146986 AGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGG 147045 ||||| || |||||||| ||||||||||||||||| | ||||||||| ||||||||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 147046 ACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCC 147105 || ||||||||||||||||| || | ||||||||||||||| || ||||| |||| || Sbjct 11146837 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACC 11146778 Query 147106 ACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||| |||||||| ||| ||||| || ||||||||||| Sbjct 11146777 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCAT 11146737 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 147438 GATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAG 147497 ||| ||||| ||||||||||||||||| ||| |||| || || | ||||||||||||||| Sbjct 11140972 GATAAACCACAGCAGCTCCTCCAAAACACCCTTCCAGAACACACGCTTGGTGGTCAGCAG 11140913 Query 147498 GGGGAACTGGTC 147509 ||| ||||| || Sbjct 11140912 GGGAAACTGATC 11140901 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| ||||| || |||||||| || || | | Sbjct 11142382 GCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTCCCCTTCCTGGCGGCTG 11142323 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 || || ||| | | || || || ||||||| | ||| |||||||| ||| ||| Sbjct 11142322 GAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCATCCCAGATCTTCACGCCC 11142263 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAA 147443 |||| || || || || | || ||||| ||| ||| ||| Sbjct 11142262 TTGGAAGACAGTTCTTTGGCGTTTGTGGATCCCTGGAAGAA 11142222 >seq17 Length=29327949 Score = 183 bits (202), Expect = 4e-41 Identities = 203/271 (75%), Gaps = 11/271 (4%) Strand=Plus/Plus Query 146876 TGAGCTTGGGGAAGGGTCGGGGGTTCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGT 146935 ||||||| || || |||||| | ||| |||||| ||||||| ||||| | ||| | Sbjct 14730677 TGAGCTTTGGAAAAGGTCGGTTCTCGCTGA--AGCTGAGTTTTCAGCGGCTCAATGTGAT 14730734 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | ||||| | || || || | || || || |||||||| || |||| |||| || | Sbjct 14730735 TCAGGTAAATATGTGCATCTCTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGA 14730794 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGC 147055 | ||||| ||||||||||||||||| | || |||||| |||||| ||||||| Sbjct 14730795 CATGGGCGACCATGTAGGTGAGCAGGGCGTTGCTGGCGATGTTG---------CCCAGGC 14730845 Query 147056 CCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACGTAAAACT 147115 ||||||||| || | ||||||||||||||| || |||| |||| ||||||| |||| Sbjct 14730846 CCATGTCCCTGGAACGCTGGTACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACT 14730905 Query 147116 GGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| ||| |||||| || |||||| |||| Sbjct 14730906 GGCAGAGGGCGTGGCAGGGAGGCAGCACCAT 14730936 Score = 145 bits (160), Expect = 9e-30 Identities = 178/244 (73%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 146910 CTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCAC 146969 |||| ||||||| ||||| | ||| || || || || || || || |||| || || | Sbjct 23985644 CTGAGTTTTCAGTGGCTCAATGTGATTTAGTTAAACATGTGCATCTCCCAATGTATGTAT 23985585 Query 146970 AAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCT 147029 ||||| || |||| |||| || || || || ||||||||||||||||| | |||| Sbjct 23985584 GAAGTCACCTGGCTGCGGGCCTGTGACCTGAGCGACCATGTAGGTGAGCAGGGCACAGCT 23985525 Query 147030 GGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCG--------ACCTCTGGTACAGC 147081 ||| | |||||| || | |||| |||||||| ||| | || |||||||||| Sbjct 23985524 GGCAAAGTTGAAAGGCATGCCCAAGCCCATGTACCCAGTACATGGTACAGCTGGTACAGC 23985465 Query 147082 TGGCACGAGAGCTCCCCGTCGGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGC 147141 |||| || |||||||| | ||| ||| |||||||| ||| |||||| || ||||| Sbjct 23985464 GGGCAGGACAGCTCCCCATTCACCAAGTAGAACTGGCAGAGGGCGTGGCAGGGAGGCAGT 23985405 Query 147142 GCCA 147145 |||| Sbjct 23985404 GCCA 23985401 >seq1 Length=78885850 Score = 143 bits (158), Expect = 3e-29 Identities = 209/294 (71%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | | || | | ||||| | ||||||| |||| |||||||| Sbjct 74826778 GTACTCCCTGGTGTTCATCATCGGTGTGGTGGGCAACGTCCTGGTGGTCCTGGTCCTCAT 74826837 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||||||||||||||| | |||||||| ||||| |||| ||||||||||||| ||| Sbjct 74826838 GAAGTACAAGAGGCTCCAAAGCATGACCAGCATCTACCTGCTCAACCTGGCCCTCTCTGA 74826897 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | ||||| || ||||| ||||| ||| | | | || || | ||| Sbjct 74826898 CCTGCTCTTCCTCTTCACACTGCCCTTCTGGATCGACTACAAGCTGAAGG--ACAGCTGG 74826955 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 || | | | | |||||||||| | | ||||| | | || ||| |||| Sbjct 74826956 GT----CTTTGGCAATGCCATGTGTAAGCTCCTGTCTGGCCTCTACTACCTGGGCTTGTA 74827011 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||| || | || ||||||||| |||| | |||||||| ||||| |||| Sbjct 74827012 CAGCGAGATCTTCTTCATCATCCTGCTGACCATCGACAGGTACCTTGCCATTGT 74827065 Score = 134 bits (148), Expect = 2e-26 Identities = 207/295 (70%), Gaps = 8/295 (3%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | || |||| ||||||| | ||||| Sbjct 74769613 GTATTCCCTGGTGTTCATTGTTGGCCTCCTGGGAAATGTGGTGGTGATAGTGATCCTCGC 74769554 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||| |||||||||||||||||||||||||| |||| ||||| ||||| || ||| Sbjct 74769553 AAAGTACAGGAGGCTCAGGATCATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 74769494 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT-TCCACTCGGGGGGAACTGGTG 8788 |||||| | | |||| || ||||| |||||||||| | | || |||||| Sbjct 74769493 CCTGCTCTTCCTCCTCACGCTTCCCTTCTGGATTCACTATGTTATGTGGAATAACTGGAT 74769434 Query 8789 GGTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGT 8848 | | || ||| |||||||||| | || || || | | || ||| ||| Sbjct 74769433 GTTTGG-------CCATTTCATGTGTAAGCTCATCTCCGGGCTCTACTACTTGGGCTTGT 74769381 Query 8849 ACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||| || ||| | || || |||||| |||| | |||||||| || || |||| Sbjct 74769380 ACAGTGAGGTCTTCTTCATTATCCTGCTGACCATCGACAGGTACCTGGCGATTGT 74769326 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/221 (71%), Gaps = 7/221 (3%) Strand=Plus/Minus Query 9204 GCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTCCTGCT 9263 ||||||||| |||| ||||| | | |||||| || ||| || |||||| | |||| Sbjct 74769016 GCTCATTTTTGTCATTATGGTGGTCTTTTTTGTTTTCTGGGCACCTTACAACCTGGTGCT 74768957 Query 9264 CATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGA--AGCGCGGCGCAGG 9321 | || | ||| |||| | | || ||| | |||||||| || || ||| Sbjct 74768956 CCTTCTCTCTGCCTTTCAAGTGAGC-TTGTTGAAC--GACTGTGAGAAGAGCAAA-CAGC 74768901 Query 9322 GTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCC 9381 ||||| ||||| | |||| | ||| |||||||| ||| |||||||||||||||||| Sbjct 74768900 -TGGACGTGGCCATGCAGGTGACAGAGGTGATCGCCCACACACACTGCTGCGTCAACCCC 74768842 Query 9382 GTCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCT 9422 |||||||| || || ||||| || | |||||| || |||| Sbjct 74768841 GTCATCTATGCCTTCGTGGGTGAGAGGTTCCAGAAGTACCT 74768801 Score = 91.5 bits (100), Expect = 2e-13 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||||| ||| | ||| ||||||||| |||||||||||||||||||||| Sbjct 74827494 TGGACCTGGCCCTGCAGGTCACAGAGGTGATCGCCTACACCCACTGCTGCGTCAACCCCA 74827553 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||||||||| || |||||||| | |||| Sbjct 74827554 TCATCTACGTCTTCGTGGGCGAGAGATTCC 74827583 >seq78 Length=10179728 Score = 136 bits (150), Expect = 5e-27 Identities = 129/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| |||||||| |||||||| ||||| ||| ||| |||||||| Sbjct 4688679 AGGGTTACCTGGGCTGCCAAGCCTTGTCGGAGATGATCCAGTTCTACCTGGTGGAGGTGA 4688738 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| |||| ||||||||| | ||| ||||| ||| |||| || |||| Sbjct 4688739 TGCCCAAGGCGGAGAATCAC------------GACCCAGACATCAAGCAGCACGTGAACT 4688786 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| ||||| || || || ||||||||| ||| Sbjct 4688787 CCCTGGGGGAAAAGCTCAAGACTCTCAGGCTGCAGCTGCGGCGCTGT 4688833 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| || || || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 4690872 AGCTCCAGGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 4690931 Query 178522 TAGAAGCTTACATGACA 178538 | ||||| ||||||||| Sbjct 4690932 TCGAAGCCTACATGACA 4690948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583457155365600