Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq16 134 1e-26 seq39 104 2e-17 seq148 98.7 9e-16 seq126 95.1 1e-14 seq40 95.1 1e-14 >seq16 Length=31725842 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || |||||||| | ||| | || ||||||||||||||||||||| | | Sbjct 21647025 CCACCACGGAATCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGAC 21647084 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| |||||||| ||||| |||| || ||||| || | |||| Sbjct 21647085 AAAGTACCTCCATCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGA 21647144 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| || | | || | | ||||| | ||| ||| Sbjct 21647145 ATTCCTTCCTTATCCTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACC 21647204 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| || || ||||| | |||||| ||||| |||||||| Sbjct 21647205 TCGAGCGTGATGGTCTTCCCCGTAAGAGTTTTTACAAAAATCTGCAT 21647251 >seq39 Length=21454635 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 35522 CTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCG 35581 |||||||| | ||| | || ||||||||||||||||||||| | ||| || || | Sbjct 17272293 CTCAACACAAGATGAAGGGTGAACTCCTTTTGAATGTTGTAATCAGACAAAGTACGTCCA 17272234 Query 35582 TCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTG 35641 || ||||| |||||||| ||||| |||| || ||||| || ||||| | ||||| Sbjct 17272233 TCTTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAAGAGGAATTCCTTCCTTA 17272174 Query 35642 TCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATC 35701 ||| |||||| || | | || | ||||| | ||| ||||| | |||||| Sbjct 17272173 TCCTGGATCTTGGCTTTTACATTTTCTGTTGTGTCCTAGGGTTCAACCTCGAGCGTGATG 17272114 Query 35702 GTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || || | || ||||| || || |||||||| Sbjct 17272113 GTCTTCTCCATAAAGGTTTTTACGAAAATCTGCAT 17272079 >seq148 Length=4887613 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || | | || || | || ||||||||||| || ||||| Sbjct 4050353 CTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAA 4050412 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | ||| | || || || ||| |||||| ||||| | | Sbjct 4050413 GATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 4050472 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || | |||||||||| ||||| || || || |||| || ||||| Sbjct 4050473 CTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 4050532 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 4050533 AAAGATCTGCAT 4050544 >seq126 Length=6421402 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||||||||||||||||||||| | ||| || || | | ||||| |||||||| ||||| Sbjct 2409847 CTCCTTTTGAATGTTGTAATCCGACAAAGTACGTCCATGTTCCAGTTGCTTACCAGCAAA 2409906 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||| || | ||||| | ||||| ||| |||||| || | | | Sbjct 2409907 GATCAGCCCTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCTTTTACATT 2409966 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| | ||| |||| | ||||| || || || || | ||||| || Sbjct 2409967 TTCTATAGTGTCTGAGGGTTCAGCCTCAAGTGTGATGGTCTTCCCTGTAAGGGTTTTTAC 2410026 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2410027 GAAAATCTGCAT 2410038 >seq40 Length=22651954 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 35552 TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAAC 35611 || |||||||| || | | ||||| | || |||||||| || || |||||||||| Sbjct 7366524 TGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGA 7366583 Query 35612 CGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCAC 35670 ||||||||||| | || | || ||||||||| ||| ||| || || | | | | | Sbjct 7366584 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGAT 7366642 Query 35671 CGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATAT 35730 ||||| || | |||||||| | ||||| || || || |||| || ||||| || || Sbjct 7366643 GGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGAT 7366702 Query 35731 CTGCAT-TCTG 35740 |||||| |||| Sbjct 7366703 CTGCATCTCTG 7366713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450769769923320