Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq26 181 8e-41 seq117 122 7e-23 seq135 118 8e-22 seq136 107 2e-18 seq127 102 6e-17 seq192 95.1 1e-14 >seq26 Length=26652979 Score = 181 bits (200), Expect = 8e-41 Identities = 405/595 (68%), Gaps = 20/595 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | ||||| || | || || | || ||||| ||||| || ||||| | || Sbjct 3408649 TTTGTGATCTTTCCTATCGAGTACCACAATATTTGGCAGATGTATAAGAAAGCCGAAGCC 3408590 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || |||||||| || || | | ||| | | |||||| | ||||| ||| ||| Sbjct 3408589 TCCTTTTGGACGGCTGAGG---TGGATCTTTCCAAAGACATTCAGCAC--TGGGAAGCAC 3408535 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 |||| || || | | ||||||| || || | | || |||||||| ||||| | Sbjct 3408534 TAAAGCCTGGGGAGAGATATTTTATTTCACATGTCCTCTCTTTCTTTGCTGCCAGCGATG 3408475 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCA 43936 | ||| |||| || ||| |||| || ||| ||||||||||| ||||| |||||| Sbjct 3408474 GCATACTCAACGAGAATCTGGTGGAGCGATTTAGCCAAGAAGTTCAGATTAC-AGAAGCC 3408416 Query 43937 CGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTT 43996 || ||||| ||||| || ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 3408415 CGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAATATCCATTCTGAAATGTACAGTCTC 3408356 Query 43997 CTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT--TGTTTAATGCGATAG 44054 || || || || ||| | ||||| | |||| | | | |||||| | || | Sbjct 3408355 CTTATTGACACTTACGTTAAAGA--CTCCAAAGAAAGAGAGTTTCTGTTTACCACCATCG 3408298 Query 44055 A-AACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCA 44110 | | || ||||| || || | || || ||||||||| | ||| | | | Sbjct 3408297 AGACCATGCCCTGC-ATGAAGAAGAAGGCGGACTGGGCCTTGCGCTGGCTTGGGGACAAA 3408239 Query 44111 AATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCA 44170 | | | | ||||||||| | | || ||||| | ||||||| || |||||||| Sbjct 3408238 GAGGTCACCTATGGAGAACGTGTGCTTGCCTTTGCCGCCATGGAAGGGATCTTCTTTTCC 3408179 Query 44171 GGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTT 44230 || || |||||| | || || | | | ||||||| || | |||||||| | || ||| Sbjct 3408178 GGTTCTTTTGCGTCGATCTTCTTGCTCAAGAAACAGGGAATAATGCCTGGTCTCACCTTT 3408119 Query 44231 T-CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 | ||| ||| ||| | || | || || ||||| || || || ||||| ||| || Sbjct 3408118 TCCAACTGACTTACT-AGCAGAGACGAGGGCTTGCACTGTGACTTTGCCTGCCTG 3408065 >seq117 Length=6347111 Score = 122 bits (134), Expect = 7e-23 Identities = 209/299 (70%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 43724 CATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTT 43783 ||||| | ||||| ||||| || ||| || ||| || ||||||||||| || || || Sbjct 1408163 CATGATGTTTGGCAGATGTATAAGAAACCAGGGGCTTCCTTTTGGACAGCTGAGGAGGTG 1408222 Query 43784 GATTTGACTAAAGACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTA 43841 |||| |||||| ||||| ||| || |||| || | || | ||||||| Sbjct 1408223 GATTAATTGAAAGACACCCAGCAC--TGGGAAGCCCTAAAGCCTGAGGAGA--CATTTTA 1408278 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 | || || |||| ||| | ||| ||||| | | ||||||||| |||||||| Sbjct 1408279 TTTCACATATTCTGGC-TTTCTCCTTGCCAGCGATTGCAAAGTCAATGAGAATTTGGTGG 1408337 Query 43902 GTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTG 43961 | ||| ||||| |||||| | ||||||| | ||||| ||||| | ||||| | Sbjct 1408338 AGCAATTTAGCCAAGATGTTCAAATGACAGAAGCCCATTGTTTCTATGGTTACCAAATGG 1408397 Query 43962 CCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || | ||||| || ||||| |||||||||||||| || || || || ||| |||||| Sbjct 1408398 CCCTGGAAAACATACATTCTGAAATGTACAGTCTCCTTATCGACACTAACACTAAAGAT 1408456 >seq135 Length=5576972 Score = 118 bits (130), Expect = 8e-22 Identities = 192/275 (70%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 43745 AAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCA 43804 || ||||| |||| || |||||||| || || || | ||| | | |||||| | | Sbjct 5108730 AAGAAAGCCGAGGCCTCCTTTTGGACGGCTGAGGAGATGGATCTTTCCAAAGACATTGGG 5108789 Query 43805 CATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTT 43864 | ||| ||| |||| ||| | | | | ||||||| | || |||| | | | Sbjct 5108790 CCCTGGGAAGCACTAAAGCCAGATAAGAGAGATTTTATTTGGCATGTCCTGGCTTGCTCT 5108849 Query 43865 GCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAA 43924 ||||| ||| | || ||||||| || || | | | | || || |||||||||| Sbjct 5108850 GCTGCCAGCAATGGCATAGTCAGGGAGAACCTCATG-GAGGAATTTAGCCAGAAGTTCAA 5108908 Query 43925 TTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAA 43984 | ||||||| | | ||||||||| || ||||||||||| ||||| | ||||| ||| Sbjct 5108909 GTTACAGAAGCCCACTCTTTTTATGGCTTCCAAATTGCCATGGAAAACCTCCATTCTGAA 5108968 Query 43985 ATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 |||||||||||||| | ||| || ||||| ||||| Sbjct 5108969 ATGTACAGTCTTCTTAAAGACACTTACATTAAAGA 5109003 >seq136 Length=5168023 Score = 107 bits (118), Expect = 2e-18 Identities = 90/108 (83%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 4988026 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 4987968 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || ||||| |||||||||||||| || || || || ||||| || || Sbjct 4987967 CATACATTCTGAAATGTACAGTCTCCTTATTGACACTTACATTAAGGA 4987920 >seq127 Length=6698447 Score = 102 bits (112), Expect = 6e-17 Identities = 186/269 (69%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 43730 ATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTG 43789 || ||||| ||| | || ||||| |||| || ||||||| || || || || ||| | Sbjct 1414236 ATTTGGCAGATGGATAAGAAAGCTGAGGCCTCCTTTTGGAGGGCTGAGGAGGTGGATCTT 1414177 Query 43790 ACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTG 43849 | |||||| | | | ||| ||| ||| || | || | | |||||| || Sbjct 1414176 GCCAAAGACATTTGGCCTGGGAA-GCACTAAGGCCTGATGAGAGA--TTTTATTTCACAT 1414120 Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || |||| | | |||||| ||| | | ||||||| ||| || |||| || ||| Sbjct 1414119 GTCCTGGCTTGCTCTGCTGCCAGCAATGACATAGTCAGTGAGAACCTGGTGGAGCGATTT 1414060 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 || |||||||||| | ||||||| | ||||| | ||| || ||||||||||| || Sbjct 1414059 A-GCCAGAAGTTCAAATTACAGAAGCCCACTGTTTCTTTGGCTTCCAAATTGCCATGGAC 1414001 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCT 43998 || | ||||| |||||||||||||| || Sbjct 1414000 AACCTCCATTCTGAAATGTACAGTCTCCT 1413972 Score = 96.9 bits (106), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 43831 AAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGA 43890 |||| ||||||| || || |||| | | |||||| || || || | ||||| ||| Sbjct 1570511 AAAAGATTTTATTTCACATGTCCTGGCTTGCTCTGCTGCCAGTGAGGGCAGAGTCACTGA 1570570 Query 43891 AAATTTGGT-TAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 ||| |||| |||| | || || |||||||||| | ||| | | ||||| |||| Sbjct 1570571 AAACCTGGTGTAGT--GATTTAGCCAGAAGTTCAAATTATGGAAACCCACTGTTTCTATG 1570628 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 | || ||||||||||| ||||| | ||||| |||||||||||||| || Sbjct 1570629 GCTTCCAAATTGCCATGGAAAACCTCCATTCTGAAATGTACAGTCTCCT 1570677 Score = 86.0 bits (94), Expect = 5e-12 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 43912 GCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 || |||||||||| | ||||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 1093087 GCCAGAAGTTCAAATTACAGAAGCCCGCTGTTTCTATGGCTTCCAAATGGCCATGGAAAA 1093146 Query 43972 TATTCATTCGGAAATGTACAGTCTTCT 43998 | ||||| |||||||||||||| || Sbjct 1093147 CCTCCATTCTGAAATGTACAGTCTCCT 1093173 >seq192 Length=2088204 Score = 95.1 bits (104), Expect = 1e-14 Identities = 196/289 (68%), Gaps = 12/289 (4%) Strand=Plus/Minus Query 43711 TCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGAC 43770 ||| || || || || | || |||| ||| | || ||||| ||| || ||||||| Sbjct 1660149 TCCTATCCAGTACCAGGGTATTCGGCAGATGGATAAGAAAGCCGAGGACTCCTTTTGGAG 1660090 Query 43771 AGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTAAAACCACAAGA 43830 || | ||||| ||| | | |||||| || | ||| ||| ||| || | || Sbjct 1660089 GGCTAAGGAAGTGGATCTTGCCAAAGACATATGGCCCTGGGAAGCACTAAGGCCTGATGA 1660030 Query 43831 AAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGA 43890 | | |||||| || || |||| | | |||||| || || || ||||||| ||| Sbjct 1660029 GAGA--TTTTATTTCACATGTCCTGGCTTGCTCTGCTGCCAGAGATGGCATAGTCACTGA 1659972 Query 43891 AAATTTGGTTAGTCG-GTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATG 43949 ||| ||| || | | || || |||||||||| | |||||| ||| |||| Sbjct 1659971 AAACCTGG--AGGAGAGATTTAGCCAGAAGTTCAAATTACAGAAG-------TTTCTATG 1659921 Query 43950 GGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCT 43998 | || ||||||||||| ||||| | ||||| |||||||||||||| || Sbjct 1659920 GCTTCCAAATTGCCATGGAAAACTTCCATTCTGAAATGTACAGTCTCCT 1659872 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/139 (74%), Gaps = 1/139 (1%) Strand=Plus/Plus Query 43864 TGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCA 43923 |||||| ||| | | ||||||| ||| || |||| | ||| || ||||||||| Sbjct 1790370 TGCTGCCAGCAATGACATAGTCAGTGAGAACCTGGTGGAGCAATTTA-GCCAGAAGTTCA 1790428 Query 43924 ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGA 43983 | | ||||||| ||||||| ||| || ||||||||||| ||||| | ||||| || Sbjct 1790429 AATTACAGAAGCCTACTGTTTTTTTGGCTTCCAAATTGCCATGGAAAACCTCCATTCTGA 1790488 Query 43984 AATGTACAGTCTTCTGATA 44002 ||||||||| || || ||| Sbjct 1790489 AATGTACAGCCTCCTTATA 1790507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435514745145