Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 127 3e-24 >seq1 Length=78885850 Score = 127 bits (140), Expect = 3e-24 Identities = 473/728 (65%), Gaps = 25/728 (3%) Strand=Plus/Plus Query 110680 AAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTC 110739 ||| || |||| | | |||||| ||||||||| | || || ||||||| | | || Sbjct 12367385 AAATTCTCCTGACAAGATTCTTCGAGTGTAGATGTTGCTAGTATAAGGTTCAATGGACTC 12367444 Query 110740 ATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTT 110799 ||||| |||||||| || || || || || || || ||||| || || | | |||||| Sbjct 12367445 GTTATTCCCCAAGATCTGAGCAGTTGAAGCAGTAGGTATTGGGGCAATAAGTAAACTGTT 12367504 Query 110800 ACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGTCG--TAGTTGAGCT 110855 | | ||| | || ||| || |||||||||| | |||||| ||| | | | Sbjct 12367505 TCTTATACCATACT--TTGCAATCTTCTCCTTGAGAAGTTTCCAGTCCCATAGGTCTG-T 12367561 Query 110856 TGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAA 110915 || | || |||| |||| ||| || ||| | |||| | | ||||| |||||| Sbjct 12367562 GGGAGTAACATTCC-ACATTTCATACCAAAGAATTCCTTTGCTTACTGGAGAGCCCTCAT 12367620 Query 110916 AGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGAT 110975 |||||||||| | | || | | || | |||||||| || ||||||| | | | || Sbjct 12367621 AGGTTTCATATGGGTCATGCTCCTTGGCTAGATCACAGCTGGCTTCCAGGGCTACATAAT 12367680 Query 110976 ACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAA---TCAAATGCGT 111032 | || || |||||||| | |||| || ||| || || | ||||| | | Sbjct 12367681 AAATAGTCTCAAAGATTTGCTTGTTCAATAACTGGGCCTC---TGGACTTTCAAAAGGAT 12367737 Query 111033 AGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTC 111092 | | || ||||| ||| || || ||||||| || | ||||| || | || Sbjct 12367738 ATCTCATCAGGATAAAAGTATCTGCCAGGTCTTGAACCCCAATTCCAATGGGGCAATGGT 12367797 Query 111093 GCATATTAGACTTTCGCGCAGTCTCA-ACGGGATAAAAATTTCTGTCAATGACTCGGTTT 111151 | |||| || | || ||| || || || | ||| | | ||| | | || Sbjct 12367798 GTTTATTTGATAAGTGTGCC-TCTGGGACAGGGTAGTAGTTTATATTAATAATTTTATTC 12367856 Query 111152 AGATTTTTGGTAACAAT--CTTT-GTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGA 111208 | |||| | ||||| |||| |||| ||| | ||| | | | ||| | ||| | Sbjct 12367857 AAATTTCGG---ACAATGACTTTAGTGACTTCTGCCAATTTCTTAAAGTCATATGTGTGT 12367913 Query 111209 GTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCA 111268 ||| |||||||| || ||||| | || ||||| || ||||| || |||| Sbjct 12367914 ---TCTGATATGACATACATTTTCAGGGCCAGGGAAGCCAAGTTACAAACTGCAACCTCA 12367970 Query 111269 TCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAA 111328 || || || ||||||| |||||||| || | ||| | || || || |||| Sbjct 12367971 TCTTTGCTGGTATACTCTACTATTTCTGTGCACAGATTGCTGCATTTGATTGTTCCCAGG 12368030 Query 111329 TTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTC 111388 |||| |||||| ||||||| || | | ||| |||||||||||||| || || || ||| Sbjct 12368031 TTCTGTTGGTTGCTCTTCTGATTATAGGAATCTTTGTAGAGCATGTATGGGGTGCCTGTC 12368090 Query 111389 TCCGTCTG 111396 || ||||| Sbjct 12368091 TCTGTCTG 12368098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627998800658400