Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq1 123 3e-23 >seq1 Length=78885850 Score = 123 bits (136), Expect = 3e-23 Identities = 914/1451 (63%), Gaps = 59/1451 (4%) Strand=Plus/Minus Query 104513 GGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCG 104572 ||||| ||||| | || |||| || | |||||||| | | | |||| ||||| Sbjct 12368497 GGGACCAATGGCAATTCTAATGGCCTTGTACCAATGCTGAGAATGTATAACAGCACAGGT 12368438 Query 104573 CGCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAG 104626 || ||||| |||||| ||| || || || || | || | || || ||| Sbjct 12368437 CGATATGTTGATCAAGGTGGAAACAAGCATCCTGGGGCATTT---GCTATTTACCTGGAG 12368381 Query 104627 CCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG 104686 || ||| | || ||| | ||||| ||||| || ||| ||| | || ||| Sbjct 12368380 CCTTGGTATTTAGACATCTTTGAGTTTCTTGATTTAAAGAAGAACACAGGAAAGGAAGAG 12368321 Query 104687 GCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGT 104745 || |||| | ||||| |||| || || || |||||||||||||||||||| ||| Sbjct 12368320 CAGCA-TGCCAGGGATCTTTTCTTTGCCCTTTGAATTCCAGATCTCTTCATGAAACAAGT 12368262 Query 104746 TGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGC 104805 ||| | | | ||| || | | |||||| | | |||||||| |||| Sbjct 12368261 CGAGACTAATCAGGACTGGCCTTTGATATGTCCAAATGAATGTCCTGGTCTG---GATGA 12368205 Query 104806 CGT---GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGG--CG 104860 || ||| ||||||||||| | || || || |||||| |||||| | || Sbjct 12368204 GGTTTGGGGAGAGGAGTTTGAGATGTTGTATGAAAGTTATGAGGAACAAGGTCATGTTCG 12368145 Query 104861 ACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACT 104920 | | | | | |||| | | ||| | || || | || |||| || ||||| Sbjct 12368144 -CAGAGTTG-TAAAAGCTCAGCAACTTTGGTATGCCATCATTGAGACTCAGACAGAGACA 12368087 Query 104921 GGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTG 104980 || || ||||||||||| |||||||| ||| ||| || ||||| || ||| |||| || Sbjct 12368086 GGCACCCCATACATGCTCTACAAAGATTCCTATAATCAGAAGAGCAACCAACAGAACCTG 12368027 Query 104981 GGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 || ||||| | |||||| || |||||||| | || | ||| |||||||||| Sbjct 12368026 GGAACAATCAAATGCAGCAATCTGTGCACAGAAATAGTAGAGTATACCAGCAAAGATGAG 12367967 Query 105041 ACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAG 105100 || || |||||| | || || | || || | |||||| |||| | | Sbjct 12367966 GTTGCAGTTTGTAACTTGGCTTCCCTGGCCCTGAAAATGTATGTCATATCAGA---ACAC 12367910 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCA---CCAAAAACCTAAAC 105157 |||| ||| | | | ||| | ||||| || ||| |||| | ||| | || Sbjct 12367909 ACATATGACTTTAAGAAATTGGCAGAAGTCACTAAA---GTCATTGTCCGAAATTTGAAT 12367853 Query 105158 AGAGTTATTGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACA 105216 | | ||||| ||| ||| | ||||| || ||| || | ||| ||| | ||| Sbjct 12367852 AAAATTATTAATATAAACTACTACCCTGTCCCAGA-GGCACACTTATCAAAT---AAACA 12367797 Query 105217 CC---GTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 || | || ||||| | || ||||| | || || ||| || || || | | Sbjct 12367796 CCATTGCCCCATTGGAATTGGGGTTCAAGACCTGGCAGATACTTTTATCCTGATGAGATA 12367737 Query 105274 CGCATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTAT 105331 | |||| | ||| || || || | | || || || |||||||| || ||| Sbjct 12367736 TCCTTTTGAAAGTCC--AGAGGCCCAGTTATTGAACAAGCAAATCTTTGAGACTATTTAT 12367679 Query 105332 CACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTT 105391 | | || || || || || | || | || ||| ||| ||||||||||||| | Sbjct 12367678 TATGTAGCCCTGGAAGCCAGCTGTGATCTAGCCAAGGAGCATGACCCATATGAAACCTAT 12367619 Query 105392 GAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAG 105451 ||||| ||||||| |||| | ||| | ||| |||| |||| || | || | Sbjct 12367618 GAGGGCTCTCCAGTAAGCAAAGGAATTCTTTGGTATGAAATGT-GGAATGTTACTCCCA- 12367561 Query 105452 CTTCACTA--CGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 105507 | ||| |||||| || ||||||||| || ||| || | ||| | | || Sbjct 12367560 CAGACCTATGGGACTGGAAACTTCTCAAGGAGAAGATTGCAA--AGTATGGTATAAGAAA 12367503 Query 105508 CAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567 |||| | || || || ||||| || || || || || || || |||||||| ||||| || Sbjct 12367502 CAGTTTACTTATTGCCCCAATACCTACTGCTTCAACTGCTCAGATCTTGGGGAATAACGA 12367443 Query 105568 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627 | | ||||||| || || | |||||||| |||||| | | | ||||| ||| Sbjct 12367442 GTCCATTGAACCTTATACTAGCAACATCTACACTCGAAGAATCTTGTCAGGAGAATTTCA 12367383 Query 105628 GATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATAT 105687 ||||| || ||| | || | || || | |||| ||| | ||| | || || Sbjct 12367382 GATTGCAAATCCTCATTTATTGAAAGATCTTACAGAGTGGGGTTTATGGAATGAAGAAAT 12367323 Query 105688 GAAGGATCTCA-TGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATG 105746 ||| ||| | | || | || || || || | || |||| ||||| ||| Sbjct 12367322 GAAAAATCAAATTATTGCATGCAATTG---CC---CAGAGCATACTGGAAATTCCTGATG 12367269 Query 105747 AAATTAAGAAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGG 105806 | | ||| || | || | || ||||||||| ||| ||| | | |||| Sbjct 12367268 ACCTGAAGCAGCTTTATAAGATGGTGTGGGAAATCTCTCAGAAAACTGTTCTCAAGATGG 12367209 Query 105807 CCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCT-CTTCATGGAAAGT 105865 | || ||| | ||| |||||||||||||| || | |||| | | | || || Sbjct 12367208 CAGCTGATAGAGGTGCTTTCATTGATCAAAGCCAGTCTTTGAACATCCATATTGCTGAGC 12367149 Query 105866 CCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACG 105925 | ||| ||| ||||||| | ||||||| | || |||||||| ||||| | || || Sbjct 12367148 CTAACTATG-GCAAGCTCACCAGTATGCACTTCTATGGTTGGAAGCAGGGTTTGAAGACT 12367090 Query 105926 GGGATGTATTA 105936 ||||||||||| Sbjct 12367089 GGGATGTATTA 12367079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583229967375960