Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17 156 3e-33 seq41 138 9e-28 seq14 82.4 6e-11 >seq17 Length=29327949 Score = 156 bits (172), Expect = 3e-33 Identities = 334/501 (67%), Gaps = 30/501 (6%) Strand=Plus/Plus Query 29732 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 29791 || ||||| |||| | || || ||||| || | ||| || ||||| || | || Sbjct 14730577 ACAGCCATTTCCATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTGTTCA 14730636 Query 29792 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 29851 || | ||||| || | | |||| || | | || || || | ||||| |||| Sbjct 14730637 GCTGTGAAGTCATCAATGGTCTCAACTGTTCGAAGGATTCTGAGCTTTGGAAAAGGTC-- 14730694 Query 29852 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCT 29911 || || | || |||||||| |||||||| || | || || |||||| | || || ||| Sbjct 14730695 GGTTCTCGCTGAAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAAATATGTGCATCT 14730754 Query 29912 CCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 29971 | || | || ||||| || || || | | || ||||| || || | |||||| ||| Sbjct 14730755 CTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCGACCATGTAGGTG 14730814 Query 29972 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 30031 || || | || |||||||||||| || || |||||||||| || | |||| Sbjct 14730815 AGCAGGGCGTTGCTGGCGATGTT---------GCCCAGGCCCATGTCCCTGGAACGCTGG 14730865 Query 30032 TAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCGTGGCACGGA 30091 || ||||| || || ||||||||| |||||| ||||| || | ||||||||| ||| Sbjct 14730866 TACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGGGCGTGGCAGGGA 14730925 Query 30092 GGAAGAGCCAT--GAGG---------CC--------CAAGTCTTTGGGGTTCCAGGCGCA 30132 || || |||| |||| || | |||||| ||||||| || || Sbjct 14730926 GGCAGCACCATCAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAGGTTCCAAGCACA 14730985 Query 30133 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30192 || |||||| | ||||| || |||||| | ||||| ||| | || |||||||| Sbjct 14730986 CATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTTTCTGCAGCTG 14731045 Query 30193 ATCCACCCCCATCCCCGAGTA 30213 ||||| || |||||||| Sbjct 14731046 GTCCACTTCCTGACCCGAGTA 14731066 >seq41 Length=20498451 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||||||| || | |||||| ||||| || | ||||||||| ||||| ||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||| || | |||||| ||||| || || |||||||||| | Sbjct 11146837 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACC 11146778 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 11146777 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 11146734 Score = 113 bits (124), Expect = 4e-20 Identities = 128/170 (75%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || ||||| || |||||||| Sbjct 11142398 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTC 11142339 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 30340 || || | | | || ||| ||| |||||| ||||||| ||| || ||||| Sbjct 11142338 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCA 11142281 Query 30341 TCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||||||||||| || ||||| ||| || ||||||| ||||||||| || Sbjct 11142280 TCCCAGATCTTCACGCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 11142231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 30114 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30173 |||| |||||||||||||||| |||||| | ||||| || |||||| | ||||| || Sbjct 11145730 CTTTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGT 11145671 Query 30174 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30219 | | | || |||||||| ||||| ||| |||||||| ||||| Sbjct 11145670 CAATCACTTTCTGCAGCTGGTCCACTCCCTGACCCGAGTAATCTGC 11145625 >seq14 Length=33454342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || || || || |||| || || ||||| ||| ||||| |||||| || || Sbjct 1459885 TTGAGTTCTCTACTTAGTACTATATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 1459944 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| ||||| || ||||| ||||||| ||||| || ||| Sbjct 1459945 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1459992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406289458381068