Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq40 89.7 3e-13 seq16 89.7 3e-13 >seq40 Length=22651954 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 34522 TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAA 34581 || ||||| || || || || ||||| | || || || ||||| ||||||||||| | | Sbjct 7366524 TGGATGTTGTAGTCAGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAATATCAGA 7366583 Query 34582 CGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAAT 34640 ||||| ||||| || || | |||||||||||| ||| ||| | ||| || | || Sbjct 7366584 CGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGGAT-TTTGGCTTTGACATTCTCGAT 7366642 Query 34641 TGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAAT 34700 ||||| | |||||| || | ||| || || || || || | || ||||| || || Sbjct 7366643 GGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACGAAGAT 7366702 Query 34701 CTGCAT 34706 |||||| Sbjct 7366703 CTGCAT 7366708 >seq16 Length=31725842 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 34494 CAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTC 34553 |||||| | ||| || ||| ||||||||||||||| ||||| || | || | | || Sbjct 21647039 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGACAAAGTACCTCCATC 21647098 Query 34554 TTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTC 34613 ||| ||||| ||||| ||||| || | | || || || || || | ||| ||||| || Sbjct 21647099 TTCCAGTTGCTTACCAGCAAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 21647158 Query 34614 TGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGT 34673 |||||| ||||| | || |||||| | || || || | || || || Sbjct 21647159 CTGGATCTTGGCTTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 21647218 Query 34674 TTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || | ||||| |||||||||||||| ||| Sbjct 21647219 CTTCCCCGTAAGAGTTTTTACAAAAATCTGCATCTTG 21647255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314713378541357