Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq16 116 3e-21 seq40 104 2e-17 seq148 100 2e-16 seq126 89.7 4e-13 seq117 89.7 4e-13 >seq16 Length=31725842 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||||||||| || || ||| | || || || || || ||||| || Sbjct 21647251 ATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCA 21647192 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 21647191 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 21647132 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| ||||||| | || | || ||||||||| Sbjct 21647131 CAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTACAAC 21647072 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| ||| | ||| | || ||| | || || ||||| Sbjct 21647071 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATTCCGTGGTGG 21647025 >seq40 Length=22651954 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| || Sbjct 7366708 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 7366649 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| |||||| ||||| |||||||| || ||||| || || || || Sbjct 7366648 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 7366589 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| ||||||||||| |||| || | || | || || |||||| Sbjct 7366588 CAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCTGACTACAAC 7366529 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| ||| | || | || | || |||| ||||| || Sbjct 7366528 ATCCA----GAGTCTACCCTGCACCTAGTGCTTCGCCTGCGAGGTGGGAT 7366483 >seq148 Length=4887613 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || ||||||||||| Sbjct 4050772 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAACCCAGT 4050713 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || ||||| || Sbjct 4050712 GATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 4050653 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || | ||||| | || |||| |||||||| Sbjct 4050652 CAGAGGCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTTTCTGATTACAAT 4050593 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||| |||| || | ||||| || Sbjct 4050592 ATCCAGAAAGAGTCCACTCTGCACCTGGTCCTGCGCCTGAGAGGTGGGAT 4050543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| |||||| | || || || || ||||| || Sbjct 4050544 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCTAGT 4050485 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || || || || Sbjct 4050484 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 4050425 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || || || || ||||||| | || |||| || ||||| Sbjct 4050424 CAGAGGCTCATCTTTGCAGGGAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 4050365 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||| || | || | || | ||| || |||||||| Sbjct 4050364 ATCCAGAAGGAGTCCACTCTGCACCTTGTCCTCCGTCTGAGGGGTGGC 4050317 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| |||||| | || || || ||||||||||| Sbjct 4051000 ATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAAGTGGAACCCAGT 4050941 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || || || || Sbjct 4050940 GATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAG 4050881 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || |||||||| | ||||| | || |||| || |||||| Sbjct 4050880 CAGAGGCTCATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTTCTGACTACAAC 4050821 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || | || |||| | || || | ||||| || Sbjct 4050820 ATCCAGAAAGAGTCTACTCTGCACCTGGTCCTTCGCCTGAGAGGTGGAAT 4050771 >seq126 Length=6421402 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || ||| | || || ||||| | ||||| || Sbjct 2410038 ATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACCATCACACTTGAGGCTGAACCCTCA 2409979 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || || || || || ||||| || || || ||||| Sbjct 2409978 GACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2409919 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| ||||| | | || | || ||||||||| Sbjct 2409918 CAAGGGCTGATCTTTGCTGGTAAGCAACTGGAACATGGACGTACTTTGTCGGATTACAAC 2409859 Query 27168 ATTCAAAAGGAGTC 27181 |||||||||||||| Sbjct 2409858 ATTCAAAAGGAGTC 2409845 >seq117 Length=6347111 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || | || || ||||| |||||| | || ||||| ||||||||||| Sbjct 1553982 ATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACTCTGGAAGTGGAACCCAGT 1554041 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || || || ||||||||||| || || || || Sbjct 1554042 GATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCTGACCAC 1554101 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | | ||||| || ||||||| | || |||| || |||||| Sbjct 1554102 CAGAGGCTCATCTTTACAGGCAAGCAGCTGGAAGATGGCCACACTCTTTCTGACTACAAC 1554161 Query 27168 ATTCAAAAGGAGTCGAC 27184 ||||| |||||||| || Sbjct 1554162 ATTCAGAAGGAGTCCAC 1554178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434895409126080