Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028669.1 Length=43012 Score E Sequences producing significant alignments: (Bits) Value seq371 141 3e-29 >seq371 Length=40469 Score = 141 bits (156), Expect = 3e-29 Identities = 300/450 (67%), Gaps = 16/450 (4%) Strand=Plus/Minus Query 11584 ATATTTGATAT-TTAGAGG--TGGCACAAT-GAGTAAATACAACGCTAAGAAAGTTGAGT 11639 ||||||||| | ||| ||| |||| || | |||||||||||| || ||||||||||||| Sbjct 778 ATATTTGATTTCTTATAGGAGTGGCGCACTTGAGTAAATACAATGCAAAGAAAGTTGAGT 719 Query 11640 ACAAAGGAATTGTATTTGATAGCAAAGTAGAGTGCGAATATTACCAATATTTAGAA---- 11695 | ||||| || || ||||||||||| || || || || ||| | || |||||| Sbjct 718 ATAAAGGTATAACGTTCGATAGCAAAGTTGAATGTGATTACTACAAGTACTTAGAACAAC 659 Query 11696 -AGTAAT-ATGAATGGCACTAACTATGATCGTATCGAACTACAACCTAAATNNNNNNNNN 11753 | |||| || |||| | ||||| ||||| ||||||| | || Sbjct 658 GATTAATTATAGATGGTTATGACTAT------ATCGAGATACAACCGAGATATGAGCTAA 605 Query 11754 NNNNNNNNNNNGGGAAGCAAAGACCGATTACGTATATAGCCGATTTCTCTTTGTGGAAGG 11813 || || ||| | | | ||||| || || || | | ||||| Sbjct 604 TACCTAAATTTGGTAAACAACGTAAAACTGAATATATTGCAGACTTTGCACTATGGAATA 545 Query 11814 AAGGGAAACTGGTTGAAGTTATAGACGTTAAAGGTAAGGCGACTGAAGTTGCCAACATCA 11873 | | || || ||||||| |||||||||||||| | |||||| ||| || || | | Sbjct 544 ACGACAAGTTGATTGAAGTCATAGACGTTAAAGGCATGGCGACAGAAACGGCTAAGTTAA 485 Query 11874 AAGCGAAGATATTCAGATATCAGTATAGAGATGTGAATTTAACGTGGATATGTAAAGCGC 11933 | |||||| |||| ||||||| ||| |||| || | || |||||||||||||| | Sbjct 484 AGGCGAAGTTATTTAGATATCTATATCCCAATGTAAAACTTACTTGGATATGTAAAGCAC 425 Query 11934 CTAAATACACAGGTCAAGAATGGATGGTATATGAGGACTTAGTGAAAGTCAGACGTAAAA 11993 |||| ||||||||| |||| ||| | ||||| || || || || ||||| || Sbjct 424 CTAAGTACACAGGTAAAGACTGGGTAACGTATGAAGAATTGAACAAGGTGAGACGCGAAC 365 Query 11994 GAAAAAGAGAAATGAAGTGATTTAATGCAA 12023 | || | || | || |||||| ||| || Sbjct 364 GCAAGAAAGCTAAGAGGTGATTAGATGAAA 335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137509893992252