Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028775.1 Length=43098 Score E Sequences producing significant alignments: (Bits) Value seq371 208 2e-49 >seq371 Length=40469 Score = 208 bits (230), Expect = 2e-49 Identities = 271/375 (72%), Gaps = 6/375 (2%) Strand=Plus/Plus Query 31495 TTAACATTGAATAAGTTTGTGTACCGTTGTATACTTTTGAGCCTTTAGGTAAATAAGCGG 31554 ||||||||| || || || | || ||||| || | || |||| || | ||| || | Sbjct 28257 TTAACATTGCATGTGTCTGCGCGCCATTGTAGACAGTAGAACCTTGTGGAAGATATGCTG 28316 Query 31555 TAGTATCTGTATTAGGTGTGATTACACGTTTACCATTAGGGAATTCAATTATTTCATTTC 31614 | |||||| | |||||||||||| || |||||| || || | ||| ||||||| || Sbjct 28317 TTGTATCTCTGTTAGGTGTGATTGCAGTTTTACCGTTTGGATAACGAATCATTTCATGTC 28376 Query 31615 TGAAACCATTCGGACCATTTCCACGTCCTTTATCCCCAACCGTAGCGAACGTATCCCGCG 31674 ||||||| |||||||| || ||| |||| || || || ||||| || || | Sbjct 28377 GGAAACCACCGGGACCATTACCTTTACCTCTATCGCCCACAGTTGCGAATGTGTCTTTAG 28436 Query 31675 CAATCTTACCGTTCTTAACTAATCTTGTAGTAGTATGTGTGTGTTCTGTACCAGTGTGTA 31734 ||||||||||||| ||||| | | ||||| |||| || ||||| ||||| ||||||| Sbjct 28437 CAATCTTACCGTTTTTAACAACGTTAGTAGTCGTATTAGTATGTTCAGTACCTGTGTGTA 28496 Query 31735 AC------TTAGGTATTTTATCCATTCCCAGCTTACCACCGACCCAGTTTAAACCTTCAA 31788 || ||||||| ||| |||||||| || || || | |||||||| | |||||| | Sbjct 28497 ACTTGATTTTAGGTAGTTTGTCCATTCCAAGTTTTCCTGCTACCCAGTTAACACCTTCGA 28556 Query 31789 TTAATTTATTAAGTCCTTTTTTAATAGCATCTACCATACCGCCGATATGACTTTTAATTT 31848 | | ||| || ||||| |||| | ||||||||| || || ||||||||||||| Sbjct 28557 TAAGTTTGTTTAGTCCACTTTTTACTTTATCTACCATGCCAGTTATGTGACTTTTAATTT 28616 Query 31849 TGCTGATAATACTTT 31863 || ||||||| || Sbjct 28617 TGTCAATAATACCTT 28631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137785080171880