Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_028915.1 Length=43228 Score E Sequences producing significant alignments: (Bits) Value seq371 556 4e-154 >seq371 Length=40469 Score = 556 bits (616), Expect = 4e-154 Identities = 868/1234 (70%), Gaps = 11/1234 (1%) Strand=Plus/Minus Query 10681 CAATTTGAGATTGAAAGTACAATAATCGCTACGCTACTTAAACAACCGGACGTACTAGAA 10740 |||| ||| ||||||||||| | ||||||| ||| | | |||| ||| | ||||| Sbjct 2369 CAATATGAAATTGAAAGTACTGTCATCGCTAGTCTATTACAGAAACCTGACTTGCTAGAG 2310 Query 10741 AAAATAAGAGTTAAAGATTACATGTTTACGAACGAAAAGTTTAAAACCTTTTTCAATTAT 10800 || ||||| ||||| |||||||| | ||| | |||||| ||| | ||||| Sbjct 2309 AAGTTAAGAATTAAACCATACATGTTCCAAGATGAACATTTTAAAGAGTTTATGAATTAC 2250 Query 10801 GTAATGGACGTCGGAAAGATAGATCATCAAGAAATTTATTTGAAAGCAACTAAAGATAAA 10860 | | || |||||| | ||| | || || ||| | || || || ||| Sbjct 2249 ATCTTAGATCAAGGAAAGGTTGATTTGAACGAGATATATCTCAAGAGTGTGAAGGACAAA 2190 Query 10861 GAATTTTTAGATGCAGATACAATAACTAAACTTTACAACTCTGATTTCATTGGATACGGC 10920 ||| ||| | ||| ||| |||||| | || |||||| |||| ||||| ||||| Sbjct 2189 TCATTCTTAAGTAACGATGTAATTACTAAATTATATAACTCTAATTTTATTGGCTACGGA 2130 Query 10921 TTCTTTGAACGTTACCAACAGGAATTATTGGAAAATTATCAACTCAACAAAGCAAACGAA 10980 |||||||| | || ||||| || ||||| |||| |||||| | | ||||| || ||| Sbjct 2129 TTCTTTGAGAGATATCAACAAGATTTATTACAAAACTATCAAATTATTAAAGCGAATGAA 2070 Query 10981 -TTGGTAACTGAGTTCAAACAACAACCTACGAACCAAAACTTT-AACAACTTAATTGATG 11038 || | | | | || |||||| | |||| | | ||||||| || | | |||| Sbjct 2069 CTTACTGA-TAATTTTAAACAATTATCTAC-ACCTGAAACTTTTAATGAAATGGTTGAGA 2012 Query 11039 AACTCAAGGATTTAAAAACGATTACTAACAAAAAAGAAGATGGAAC-CAAGAAGTTTGTT 11097 |||| || || |||| | || || | ||||||||| ||||| || ||| | | || | Sbjct 2011 AACTTAAAGAGTTAACTAATATCACAACCAAAAAAGAGGATGGCACTCAACGA-TATGCT 1953 Query 11098 GANNNNNNNNNNNNNNNNNNATACAGCGATAGCCCTAAGAAGCAAATTAAGACGGGTTAC 11157 | ||| || ||| ||| | | | | || || || Sbjct 1952 AAACAATTAGTTGAGGATTTATATAGTGATGAACCTGTGCAAAGAGTAAAAACCAAATAT 1893 Query 11158 AAGCTCATGGATTACAAAATAGGGGGATTAGAGCCATCACAATTAATCGTCATCGCAGCG 11217 || |||||||| || ||||| || || || |||||| ||||| || || || || || Sbjct 1892 AAACTCATGGACTATAAAATCGGTGGTTTTGAGCCAAGTCAATTGATAGTAATTGCTGCT 1833 Query 11218 CGTCCCTCAGTGGGTAAAACAGGTTTTGCATTAAACATGATGTTGAACATAGCACGAAAT 11277 ||||| || ||||| || || ||||||||||| ||||||| |||||| ||| | | Sbjct 1832 CGTCCAAGTGTCGGTAAGACTGGATTTGCATTAAATATGATGTGGAACATTGCAAAACAA 1773 Query 11278 GGATATAAAACATCTTTCTTTAGTCTTGAAACAACTGGCACATCAGTATTGAAACGTATG 11337 || | ||||||| ||||||||| ||||||||||||| | | | || || | || Sbjct 1772 GGCCACCAAACATCATTCTTTAGTATTGAAACAACTGGAAAAAACATCTTACAAAGATTG 1713 Query 11338 TTATCAACAATTACTGGTATTGAGTTAACCAAGATAAAAGAAAT-CAGGAACTTAACACC 11396 |||| || || |||||||| ||||||| | || ||| | | || || || | | || Sbjct 1712 CTATCTACTATCACTGGTATCGAGTTAAACCGTATTAAAAATGTTCAAGACCTGA-CGCC 1654 Query 11397 GGATGACTTAACGAAGTTAACAAATGCAATGGATCAAATTATGAAGTTAGGTATTGATAT 11456 |||| ||||| | |||||| ||| || |||||||| | || |||||||| | || Sbjct 1653 AAATGAATTAACTGATTTAACAGGTGCTATAGATCAAATACTTAAATTAGGTATAAACAT 1594 Query 11457 TTCTGACAAAAGCAATATCACACCGCAAGATGTCCGAGCACAAGCGATGAGACATTCAGA 11516 | |||| | |||| | ||||| ||||| | ||||||||||||||| ||| || Sbjct 1593 TAATGACGATAGCACAACAACACCACAAGACATTAGAGCACAAGCGATGAAGCATAGTGA 1534 Query 11517 CAGGCAACAAGTTATTTTTATAGATTATCTTCAACTGATGGATACTGATGCGAAAGTTGA 11576 || | ||||||||| ||||| ||||| |||||| | ||||| || ||| | || ||||| Sbjct 1533 CAAACCACAAGTTATATTTATTGATTACCTTCAATTAATGGAAACAGATACTAATGTTGA 1474 Query 11577 TAGACGTGTAGCAGTAGAAAAGATATCACGTGACTTAAAGATAATCGCTAATGAGACAGG 11636 |||||| || ||||| |||||||||||||| ||||| || || || || ||||| ||||| Sbjct 1473 TAGACGCGTTGCAGTTGAAAAGATATCACGCGACTTGAAAATCATAGCAAATGAAACAGG 1414 Query 11637 CGCAATCATTGTACTACTTTCACAACTGAATCGAGGTGTCGAGTCTAGGCAGGATAAACG 11696 ||||| || ||| | ||||| ||| ||||||| || || || || || | |||||||| Sbjct 1413 AGCAATTATAGTAGTTCTTTCTCAATTGAATCGTGGAGTTGAATCAAGAAACGATAAACG 1354 Query 11697 ACCAATGCTATCGGACATGAAAGAATCAGGCGGAATAGAAGCAGATGCGAGTTTAGCAAT 11756 || ||| |||| ||||||||||| ||||| ||||| |||||||| || ||| | || || Sbjct 1353 TCCGATGTTATCAGACATGAAAGAGTCAGGTGGAATTGAAGCAGACGCAAGTATGGCGAT 1294 Query 11757 GCTACTTTACCGTGATGATTATTATAACCGTGACGAAGATGACAGTATCACAGGCAAATC 11816 | | | || | |||||||| || | | || |||| || | || | || ||||| Sbjct 1293 GATGTTGTATAGAGATGATTACTACGAACAAGATGAAGCAGA-TGAAT--CTGGTAAATC 1237 Query 11817 TATTGTTGAATGTAACATAGCCAAAAACAAAGACGGCGAAACCGGAATAATTGAATTCGA 11876 ||| ||||||||||| |||||||| |||||||| || ||||| || | |||||||| || Sbjct 1236 TATCGTTGAATGTAATATAGCCAAGAACAAAGATGGTGAAACTGGTGTTATTGAATTTGA 1177 Query 11877 GTATTACAAGAAGACACAGAGGTTTTTCACATGA 11910 | ||||||||| ||||||||||||||||||||| Sbjct 1176 ATTTTACAAGAAAACACAGAGGTTTTTCACATGA 1143 Score = 352 bits (390), Expect = 8e-93 Identities = 547/774 (71%), Gaps = 12/774 (2%) Strand=Plus/Minus Query 7674 TAGAGCTAGGGAGTTTAACGGTATGGAAGAAGCGAGTATCAATATGGATTATCACAAAGC 7733 |||||| || |||||||||||| | || |||| || || ||||| ||||||| || Sbjct 5240 TAGAGCAAGAGAGTTTAACGGTTTAGATGAAGTGACAATTGATATGTCATATCACATGGC 5181 Query 7734 AATCAAGAAAACAGTGACAGAAACAATTGAGTATGAGGAGGTAGAACATGACTGAACAAA 7793 || || | ||| | |||| | | | ||||||||| |||| |||| |||| ||| Sbjct 5180 GATTAAACATACACATATAGAAGAAGATAAATATGAGGAGTTAGATTATGAGTGAAAAAA 5121 Query 7794 CATTATTCGAACAGTTGAACAGTAAAAATGTGAACGATCATACAGAACaaaaaaaTGGAT 7853 ||||||| |||||||| |||| | || || |||||| ||| | || ||||| | Sbjct 5120 CATTATTTGAACAGTTAAACACAATTAACGTATCTGATCATGTTGAAAAGAAGAATGGCT 5061 Query 7854 -TAACTTATCTAGCGTGGTCATATGCACATCAAGAGCTGAAAAAGATTGACCCAAACTAC 7912 ||||| || |||| ||| || |||||||| || | || ||||| ||||||| ||||| Sbjct 5060 ATAACT-ATTTAGCTTGGACACATGCACATGAACAACTTAAAAATGTTGACCCCAACTAT 5002 Query 7913 ACAGTAAAAGTGCACGAGTTTCCACATCCAGATATTAACACAGAA--AATTATTTTGTAC 7970 | |||| | || ||||||||||| || ||||| | || | | || ||||| |||| Sbjct 5001 GAAATAAAGATACATGAGTTTCCACACCCGGATAT-AGCAAATGACCAAGTATTT-GTAC 4944 Query 7971 CTTATTTGACTACACCAGAGGGCTATTTTGTACAGGTATCTGTGACTGTGAAAGATAGTA 8030 ||||| | | || ||||| || ||||||||| | ||||| | | | |||| || || Sbjct 4943 CTTATCTAGCAACTCCAGAAGGTTATTTTGTAAAAGTATCAATCATATTAAAAGGTATTA 4884 Query 8031 CAGAGACTGAATGGCTTCCAGTATTGGACTTTAGAAACAAATCGCTTGCTAAAGGTAGTG 8090 | || | |||||| | |||||||| ||||||| |||||| ||| | || ||||| | Sbjct 4883 CCGAATCAGAATGGTTACCAGTATTAGACTTTAAAAACAAGTCGTTAGCGAAAGGGCAAG 4824 Query 8091 CAACAACTTTTGATATCAACAAAGCGCAAAAACGATGCTTCGTTAAAGCTTCGGCTTTAC 8150 |||| || || |||||||| ||||| |||||||| ||||| |||||||| | || |||| Sbjct 4823 CAACTACATTCGATATCAATAAAGCTCAAAAACGTTGCTTTGTTAAAGCAGCAGCATTAC 4764 Query 8151 ACGGTCTAGGCTTATATATTTACAACGGCGAGGAACTACCAAGTGCAAGTGACAACGATA 8210 |||| |||| |||| || |||||| | || ||| |||| | ||| ||| | ||| Sbjct 4763 ACGGCTTAGGTCTATACATCTACAACCGTGAAGAATTACCGAATGCTAGTAGTGAAGATG 4704 Query 8211 TTACAGAATTAGAAGAGCGTATCAATCAGTTCGTGAACTTATCTCAAGAAAAAGGGCGAG 8270 ||| ||||||| || | | || || | | || ||||||||||| ||| Sbjct 4703 CACAAGAGCTAGAAGATAAGATAGCTGAATTTGTACGCATTTCACAAGAAAAAGGCAGAG 4644 Query 8271 ATGCAACTATCGATAAAACGATGAGATGGCTAAAAATCTCTAACATTAATAAATTGAGTC 8330 ||||||| | || ||||| ||| | ||| || || || |||||||| || ||| Sbjct 4643 ATGCAACATTGGAAAAAACAATGCGTTGGTTAGGCATTGAAAATATTAATAAGTTAAGTG 4584 Query 8331 AAAAACAAATCGCAGAAGCACACCAAAAATTAGATGCGGGATTAAAACAATTGGATAGTG 8390 ||| | ||| |||| || |||| ||||||| |||||||||||||| || | Sbjct 4583 GCAAAGGCTTGGCAACAGCAAACGCAAAACTAGATGCAGGATTAAAACAATTAGACA--- 4527 Query 8391 AGGAGAAACAATAATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGA 8444 ||||||| ||||||| || |||| | ||| ||||| | |||||||| Sbjct 4526 AGGAGAATGAATAATG---AATTTAACAATCTTAACGGGACGAATCACAAAAGA 4476 Score = 223 bits (246), Expect = 1e-53 Identities = 460/683 (67%), Gaps = 5/683 (1%) Strand=Plus/Minus Query 8821 CCGTTCTGATTGGAATGATTAAATGCCGAAAATTACTAGTTATATCACTCAAGACGACGG 8880 ||||||| | || |||||| ||| || ||| | | || ||| ||| | || || Sbjct 4114 CCGTTCTAA--GGTGTGATTATATGGCGGTAATAAAAAACTACATCCAACAAAATGATGG 4057 Query 8881 CACAACAACAGTTGTCATCTCGGGTGTTGAATTAGGCAATAAAGAAACATTACTACTTGA 8940 ||||| ||| | ||||| |||||| | | || ||||| ||||||||||| Sbjct 4056 CACAATAACTGCCGTCATTGAGGGTGTAACACTTACTAACAAAGACTTTTTACTACTTGA 3997 Query 8941 TAACGGATTTGATGTGGAAGTCGATGTAAGCGTCATAGATCCGTTTCAAATTACCGGCAA 9000 ||||||||| || || ||| | ||||| ||| | || || | |||| || | || Sbjct 3996 TAACGGATTAGAAGTTGAATGCAATGTAGCAGTCGTTGACCCATACAAAATAACTGATAA 3937 Query 9001 GCAACGACGAAAAATATTTGCGCTTGTCAAAGATATAGAAGAACATACAGGTCAACCAAT 9060 |||||| ||||| |||| || ||||| || |||||||||| |||||||| ||| Sbjct 3936 GCAACGTAGAAAAGTATTCGCTCTTGTGAACGATATAGAAGCTCATACAGGCACGCCACA 3877 Query 9061 GGACTATATGAGACATATGTTCATCGAGTTTGTAAGAACGTACTACGGCTATGATGAACG 9120 || |||||||| || | ||| || | |||| | | |||||||| ||||| || Sbjct 3876 AGATTATATGAGGAATGTATTCCAAGAATATGTACGTGTGCTATACGGCTACGATGAGCG 3817 Query 9121 TATTTCGCTAAGTAATTGTACGAGAACACAAGCAAGTCAAATCATTGAAGCAACGCTTGA 9180 || || || | ||||| | || | | ||||||||||| || || | | | |||| Sbjct 3816 CATATCACTTGCTGATTGTTCTAGGAAAGTGGCAAGTCAAATTATAGATGTAGCAATTGA 3757 Query 9181 CTGGACGTTCTACAACGACATACCACTTAGCTACAAAACGAGTAATCTACTGAAACAAGA 9240 |||| ||| | ||| |||| || || || || ||||| ||| ||||| | || | || Sbjct 3756 ATGGATATTCGAGAACAACATCCCGCTCAGATATAAAACAAGTGATCTAATCAAGAATGA 3697 Query 9241 TAAATCATTCTTATACTGGTCAACTGTTAACCGCAACTGTGTAATATGCGGAAAGCCTCA 9300 | | | || |||||| | | ||| | || | || || || || || || ||| || Sbjct 3696 CAGAACGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAG---CA 3640 Query 9301 CGCAGACCTAGCGCATTATGAAGCAGTCGGCAGAGGCATGAACAGAAACAAAATGAATCA 9360 ||||| ||||| |||||| ||||||| || | || |||||| ||| || | || Sbjct 3639 TGCAGAGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACA 3580 Query 9361 CTATGACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCGATTGG 9420 | | |||| | ||||||| ||||| | ||||| || |||||||| | || || Sbjct 3579 TTTTAACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGG 3520 Query 9421 CGTTAAGTCATTTGATGATAAATATCACTTGCATGACTCGTGGATAAAAGCTGATGAGAG 9480 | | | || || | || ||||| || | | || ||| | | | ||| ||||| Sbjct 3519 CATGGATAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAG 3460 Query 9481 GCTCAACAAAATGCTGAAAGGAG 9503 || ||||||||||||||||||| Sbjct 3459 ACTAAACAAAATGCTGAAAGGAG 3437 Score = 147 bits (162), Expect = 6e-31 Identities = 241/353 (68%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 12357 TGAGTAAATACAACGCTAAGAAAGTTGAGTATAAAGGAATTGTATTTGATAGCAAAGTAG 12416 ||||||||||||| || |||||||||||||||||||| || || ||||||||||| | Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 12417 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAACTATGATC 12470 | ||||| || ||| | || |||||| | |||| || |||| | ||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGGTTATGACTAT---- 633 Query 12471 GTATCGAAATACAACCGAAATTTNNNNNNNNNNNNNNNNNNNNGAAACAAAGACCGATTA 12530 ||||| |||||||||| || | |||||| | | | Sbjct 632 --ATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 12531 CGTATATAGCCGATTTCTCTTTGTGGAAGGAAGGGAAACTGGTTGAAGTTATAGACGTTA 12590 ||||| || || || | | ||||| | | || || ||||||| |||||||||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 12591 AAGGTAAGGCGACTGAAGTTGCCAACATCAAAGCGAAGATATTCAGATATCAGTATAGAG 12650 |||| | |||||| ||| || || | || |||||| |||| ||||||| ||| Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 12651 ATGTGAATTTAACGTGGATATGTAAAGCGCCTAAATACACAGGTCAAGAATGG 12703 |||| || | || |||||||||||||| ||||| ||||||||| |||| ||| Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGG 402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138201059280620