Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17 233 2e-56 seq41 167 2e-36 >seq17 Length=29327949 Score = 233 bits (258), Expect = 2e-56 Identities = 354/506 (70%), Gaps = 32/506 (6%) Strand=Plus/Plus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 |||||| |||| |||||||| | || | || || ||||||||||| | |||| Sbjct 14730573 CTACACAGCCATTTCCATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTG 14730632 Query 6454 CTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACG 6512 || ||| | |||||||| || | || | ||||| ||| |||||| || || | Sbjct 14730633 TTCAGCTG-TGAAGTCATCAATGGTCTCAACTGTTCGAAGGATTCTGAGCTTTGGAAAAG 14730691 Query 6513 GTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCG 6572 ||||| ||||| || ||||| | ||| |||| ||||| |||||||| ||||| | Sbjct 14730692 GTCGGT--TCTCGCTGAAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAAATATGTG 14730749 Query 6573 CATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGT 6632 |||| | ||| ||||| || | || || || | || |||||| |||| ||||| Sbjct 14730750 CATCTCTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCGACCATGT 14730809 Query 6633 ACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATC 6692 | |||||||| |||| || || |||||| || | |||||||| | || | Sbjct 14730810 AGGTGAGCAGGGCGTTGCTGGCGATGTTG---------CCCAGGCCCATGTCCCTGGAAC 14730860 Query 6693 GTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGC 6752 | || || |||||||||||| |||| || ||| | |||||||| |||||||||| ||||| Sbjct 14730861 GCTGGTACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGGGCGTGGC 14730920 Query 6753 -------------------ACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 | || || ||| ||||||||||||| || ||| ||||||| Sbjct 14730921 AGGGAGGCAGCACCATCAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAGGTTCCAA 14730980 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || ||||| | ||| ||||||||||||||||| || | |||||| |||| | |||| Sbjct 14730981 GCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTTTCTGC 14731040 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATA 6879 ||||||||| || |||| ||||| || Sbjct 14731041 AGCTGGTCCACTTCCTGACCCGAGTA 14731066 Score = 233 bits (258), Expect = 2e-56 Identities = 354/506 (70%), Gaps = 32/506 (6%) Strand=Plus/Minus Query 34466 TATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCT 34525 || ||||| |||| || ||||||||||||| | |||| |||||| | || |||||| Sbjct 14731066 TACTCGGGTCAGGAAGTGGACCAGCTGCAGAAAGTGACTGACACCATCAAAACCAACCCT 14731007 Query 34526 GATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTC 34585 ||||||||||| ||| | ||||| || ||||||| ||| || ||||||||||||| ||| Sbjct 14731006 GATGACAGAAGAATCATCATGTGTGCTTGGAACCTGAAAGACCTCCCTCTGATGGTGCTA 14730947 Query 34586 CCCCCGT-------------------GCCACACCCTCTGCCAATTCTACGTCGCGAATGG 34626 || || | ||||| |||||||||| |||||||| | ||| || Sbjct 14730946 CCTCCCTCTGATGGTGCTGCCTCCCTGCCACGCCCTCTGCCAGTTCTACGTGGTGAACGG 14730887 Query 34627 GGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 |||| |||||||||||| || || || || | |||||||| | || ||| Sbjct 14730886 AGAGCCGTCCTGCCAGCTGTACCAGCGTTCCAGGGACATGGGCCTGGG---------CAA 14730836 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||| || || |||| |||||||| |||||| |||| |||||| || | || || Sbjct 14730835 CATCGCCAGCAACGCCCTGCTCACCTACATGGTCGCCCATGTCACTGGCCCGCAGCCAGG 14730776 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | || ||||| ||| | ||||| ||||| |||||||| ||||| |||| ||| Sbjct 14730775 TGACTTTGTACATACTTTGAGAGATGCACATATTTACCTGAATCACATTGAGCCGCTGAA 14730716 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCAC 34866 | ||||| || ||||| |||||| || || |||||| ||| ||||| | || Sbjct 14730715 AACTCAGCTTCAGCGAGA--ACCGACCTTTTCCAAAGCTCAGAATCCTTCGAACAGTTGA 14730658 Query 34867 CTCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGG 34925 | || |||||||| | ||| || |||| | ||||||||||| || || | | Sbjct 14730657 GACCATTGATGACTTCA-CAGCTGAACACTTTCAGCTGGAAGGGTACAATCCACATCCTG 14730599 Query 34926 CCCTGAAGATGGAGTTGGCGGTGTAG 34951 | | |||||||| |||| |||||| Sbjct 14730598 CTATTAAGATGGAAATGGCTGTGTAG 14730573 Score = 176 bits (194), Expect = 4e-39 Identities = 278/395 (70%), Gaps = 10/395 (3%) Strand=Plus/Plus Query 34566 ATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATG 34625 ||||||||||| |||| || || || |||||| |||||||||| |||||| | | ||||| Sbjct 23985389 ATCTCCCTCTGTTGGCACTGCCTCCCTGCCACGCCCTCTGCCAGTTCTACTTGGTGAATG 23985448 Query 34626 GGGAGCTGTCCTGCCAGCTCTATCA-----ACGAT---CGGGAGACATGGGGTTAGGGGT 34677 ||||||||||||||| ||| || || || || | || ||||||| || || | Sbjct 23985449 GGGAGCTGTCCTGCCCGCTGTACCAGCTGTACCATGTACTGGGTACATGGGCTTGGGCAT 23985508 Query 34678 GCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTT 34737 ||| |||||| |||| || | || |||||||| |||||| ||||||| ||| || Sbjct 23985509 GCCTTTCAACTTTGCCAGCTGTGCCCTGCTCACCTACATGGTCGCTCAGGTCACAGGCCC 23985568 Query 34738 GGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 | || || || | | ||||| ||||| ||||| ||| | || || || ||||| || Sbjct 23985569 GCAGCCAGGTGACTTCATACATACATTGGGAGATGCACATGTTTAACTAAATCACATTGA 23985628 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCG 34857 || || | ||| | || |||| | || | ||||| |||||||||| ||| Sbjct 23985629 GCCACTGAAAACTCAGATTCAGGGAGAAGCAAGAACTTTCCCAAAGCTCAAAATCCTTCA 23985688 Query 34858 AGCCGTCACCTCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTACCGGC 34916 | | || |||| |||||||| | ||| || ||||| | ||||||||||| | Sbjct 23985689 AACAGTTGAGACAATTGATGACTTCA-CAGCTGAAGACTTTCAGCTGGAAGGGTACAATC 23985747 Query 34917 CGCACTCGGCCCTGAAGATGGAGTTGGCGGTGTAG 34951 | || | || | |||||||| |||| |||||| Sbjct 23985748 CACATCCTGCTATTAAGATGGAAATGGCTGTGTAG 23985782 Score = 176 bits (194), Expect = 4e-39 Identities = 278/395 (70%), Gaps = 10/395 (3%) Strand=Plus/Minus Query 6394 CTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTC 6453 |||||| |||| |||||||| | || | || || ||||||||||| | ||||| Sbjct 23985782 CTACACAGCCATTTCCATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTC 23985723 Query 6454 CTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACG 6512 || ||| | |||||||| |||| || | | ||| |||||||||| ||||| | Sbjct 23985722 TTCAGCTG-TGAAGTCATCAATTGTCTCAACTGTTTGAAGGATTTTGAGCTTTGGGAAAG 23985664 Query 6513 GTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCG 6572 || | |||| || | ||| | || |||| ||||| || || || | ||| | Sbjct 23985663 TTCTTGCTTCTCCCTGAATCTGAGTTTTCAGTGGCTCAATGTGATTTAGTTAAACATGTG 23985604 Query 6573 CATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGT 6632 |||| ||||| ||||| | | || || || | || ||| ||||||| ||||| Sbjct 23985603 CATCTCCCAATGTATGTATGAAGTCACCTGGCTGCGGGCCTGTGACCTGAGCGACCATGT 23985544 Query 6633 ACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCG--- 6689 | |||||||| || | || |||| |||||| |||| || || ||||||| || | Sbjct 23985543 AGGTGAGCAGGGCACAGCTGGCAAAGTTGAAAGGCATGCCCAAGCCCATGTACCCAGTAC 23985484 Query 6690 ATCGT-----TGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAG 6744 || || || || ||| |||||||||||||||||||| | | |||||| |||||||| Sbjct 23985483 ATGGTACAGCTGGTACAGCGGGCAGGACAGCTCCCCATTCACCAAGTAGAACTGGCAGAG 23985424 Query 6745 GGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGAT 6779 || |||||| || || || |||| ||||||||||| Sbjct 23985423 GGCGTGGCAGGGAGGCAGTGCCAACAGAGGGAGAT 23985389 >seq41 Length=20498451 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || ||||||||||||||||| || || ||||| |||||||||| |||||||| | ||| Sbjct 11146725 GACCTCCCTCTGATGGCGCTGCCTCCCTGCCATGCCCTCTGCCAGTTCTACGTGGTGAAC 11146784 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || || || || |||||||| | || ||||| ||| Sbjct 11146785 GGAGAGCTGTCCTGCCAGCTGTACCAGCGCTCCGGGGACATGGGCCTGGGCGTGCCCTTC 11146844 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTC 34729 |||||||| || ||||| |||||||| |||||| |||| || ||| Sbjct 11146845 AACATTGCCAGCTACGCCCTGCTCACCTACATGGTCGCCCACGTC 11146889 Score = 167 bits (184), Expect = 2e-36 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 6616 GACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAA 6675 ||| || |||| |||||| |||||||| ||||| || ||||||||||| ||||| || | Sbjct 11146889 GACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGCACGCCCAG 11146830 Query 6676 CCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAA 6735 |||||||| || || || || || ||||||||||||||||| || ||| | |||||||| Sbjct 11146829 GCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACCACGTAGAA 11146770 Query 6736 TTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 |||||||||| ||||| || || ||||||||||||||||| || Sbjct 11146769 CTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAGAGGGAGGTC 11146725 Score = 111 bits (122), Expect = 1e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| |||| || || || ||| ||| |||||||||||||| || | ||||| | Sbjct 11142235 CCACAAACGCCAAAGAACTGTCTTCCAAGGGCGTGAAGATCTGGGATGCCAATGGGTCCC 11142294 Query 34353 GAGACTTTCTGGACAAGC-GGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| ||||||| | |||| || ||| | || |||| || ||| |||| || || Sbjct 11142295 GAGACTTCCTGGACAGCCTGGGGTTTTCCAGC-CGCCAGGAAGGGGACCTGGGTCCCGTG 11142353 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 11142354 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGACTA 11142388 Score = 111 bits (122), Expect = 1e-19 Identities = 119/155 (77%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||| ||| || |||| Sbjct 11142388 TAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTCCCCTTCCTGG 11142329 Query 6959 CGAGATGGGAACCCCC-GCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 || | ||| || |||| | ||||||| |||||||| ||||| | || ||||||||||| Sbjct 11142328 CG-GCTGGAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCATCCCAGATCTT 11142270 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || || |||| ||| |||| Sbjct 11142269 CACGCCCTTGGAAGACAGTTCTTTGGCGTTTGTGG 11142235 Score = 102 bits (112), Expect = 7e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || || ||||| ||||||| ||||||||||||| | ||||| |||||| | || Sbjct 11145625 GCAGATTACTCGGGTCAGGGAGTGGACCAGCTGCAGAAAGTGATTGACACCATCAAAACC 11145684 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||||||||||||||||| ||| | |||||||| |||||||| || Sbjct 11145685 AACCCTGATGACAGAAGAATCATCATGTGCGCCTGGAACCCAAA 11145728 Score = 102 bits (112), Expect = 7e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| |||||||| | ||| ||||||||||||||||| || | |||||| Sbjct 11145728 TTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCA 11145669 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | ||||||||||||| ||||||| ||||| || || || Sbjct 11145668 ATCACTTTCTGCAGCTGGTCCACTCCCTGACCCGAGTAATCTGC 11145625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448238703728880