Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq2 185 7e-42 seq63 122 7e-23 seq17 89.7 4e-13 >seq2 Length=46765855 Score = 185 bits (204), Expect = 7e-42 Identities = 205/272 (75%), Gaps = 1/272 (0%) Strand=Plus/Minus Query 1255 TTAAG-TGTTTTTTAGAAACGCCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAA 1313 ||||| |||| | | |||| | || ||| | | ||||| |||||||| ||| || Sbjct 36241385 TTAAGATGTTCTCTGCAAACTTCCCAGGAAATCTTAATTGTGACATGGCAGAAAAAGAAG 36241326 Query 1314 GCATCAAGCCCAGAAAACATGGCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCA 1373 || ||||||||||||||||| ||| | ||| | |||| |||||||| || ||||| Sbjct 36241325 GCTGTAAGCCCAGAAAACATGGTCACCTACAGTGAGAACCATGGGGTTGTGGTCCAGCCT 36241266 Query 1374 GCATACAAAGATAAAATGAACATAACTGAGCTTGGACTACAAAACACAACTATAACCTTC 1433 || || || || | | ||||| |||||||| ||| | || || || | || |||||| Sbjct 36241265 GCCTATAAGGACAGGGTAAACATCACTGAGCTGGGATTCCACAAATCAGCCATTACCTTC 36241206 Query 1434 TGGAACACAACATTGGATGATGAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCT 1493 |||||||||||| |||| ||||||||||| |||| |||| | || || || ||||| ||| Sbjct 36241205 TGGAACACAACACTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGCTCT 36241146 Query 1494 GGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 |||||||| ||||||| || || || ||||| Sbjct 36241145 GGGAAGATCTCAGGAACAGCCTGCCTTACCCT 36241114 >seq63 Length=14881817 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 9030948 GTGGTGGAGGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 9030889 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 9030888 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 9030829 Query 3365 ATTGCCGCGTGGATGACAGA 3384 |||||| |||||||| || Sbjct 9030828 ATTGCCCTCTGGATGACTGA 9030809 >seq17 Length=29327949 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/233 (68%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 118464 TTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGTATGAATTC 118523 ||||||||||||||||||||| | || ||||| ||||| || | |||||||||||| || Sbjct 23985638 TTTCAGTGGCTCAATGTGATTTAGTTAAACATGTGCATCTCCCAATGTATGTATGAAGTC 23985579 Query 118524 ACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTAC 118583 ||| || | ||||| | ||||| | |||||| || | || ||||||| | Sbjct 23985578 ACCTGGCTGCGGGCCTGTGACCTGAGCGACCATGTAGGTGAGCAGGGCACAGCTGGCAAA 23985519 Query 118584 ATTAAAAGGAACACCCAGACCCATGTCTGCTG--------ATCTCTGGTACAATTGGCAA 118635 || ||||| | |||| ||||||| | | | |||||||| |||| Sbjct 23985518 GTTGAAAGGCATGCCCAAGCCCATGTACCCAGTACATGGTACAGCTGGTACAGCGGGCAG 23985459 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAG 118688 || |||||||| || | | || ||||| | | | ||| || |||||||| Sbjct 23985458 GACAGCTCCCCATTCACCAAGTAGAACTGGCAGAGGGCGTGGCAGGGAGGCAG 23985406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414455437477156