Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq16 122 6e-23 seq126 111 1e-19 seq39 100 2e-16 seq40 95.1 8e-15 seq148 87.8 1e-12 >seq16 Length=31725842 Score = 122 bits (134), Expect = 6e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || ||||| || ||||| || || ||||| ||||| ||||| || Sbjct 21647254 AAGATGCAGATTTTTGTAAAAACTCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCC 21647195 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | |||| ||||| || || || || ||||| | || || ||| Sbjct 21647194 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 21647135 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||||| | | | ||||| |||||| Sbjct 21647134 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGAGGTACTTTGTCTGATTAC 21647075 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||||| ||||| |||||||| | ||| | || || || || || || || Sbjct 21647074 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGATTCCGTGGTGG 21647025 >seq126 Length=6421402 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| || || || || ||||| || || | ||| || Sbjct 2410041 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACCATCACACTTGAGGCTGAACCC 2409982 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| | |||| ||||| || || || || ||||| | || || ||| Sbjct 2409981 TCAGACACTATAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2409922 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||| | | ||| ||||| |||||| Sbjct 2409921 CAGCAAGGGCTGATCTTTGCTGGTAAGCAACTGGAACATGGACGTACTTTGTCGGATTAC 2409862 Query 23788 AACATACAAAAAGAGTCCA 23806 ||||| ||||| ||||||| Sbjct 2409861 AACATTCAAAAGGAGTCCA 2409843 >seq39 Length=21454635 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||| | | || || || ||||| ||||| ||||| || Sbjct 17272076 AAGATGCAGATTTTCGTAAAAACCTTTATGGAGAAGACCATCACGCTCGAGGTTGAACCC 17272135 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||| |||| ||||| || || || || ||||| | || | ||| Sbjct 17272136 TAGGACACAACAGAAAATGTAAAAGCCAAGATCCAGGATAAGGAAGGAATTCCTCTTGAT 17272195 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| || || ||||||||||| | ||| ||||| |||||| Sbjct 17272196 CAGCAAAGGCTGATCTTTGCTGGTAAGCAACTGGAAGATGGACGTACTTTGTCTGATTAC 17272255 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||| |||| ||| | ||| | || || || Sbjct 17272256 AACATTCAAAAGGAGTTCACCCTTCATCTTGTGTTGAG 17272293 >seq40 Length=22651954 Score = 95.1 bits (104), Expect = 8e-15 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 7366708 ATGCAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 7366649 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | |||| | ||||| || || | || || || || Sbjct 7366648 GACACCATCGAGAATGTCAAAGCCAAAA-TCCAAGACAAGGAGGGCATCCCCCCTGACCA 7366590 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | ||||||||||||||||| ||||| || | || ||| | || ||||| Sbjct 7366589 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCTGACTACAA 7366530 Query 23790 CATACA 23795 ||| || Sbjct 7366529 CATCCA 7366524 >seq148 Length=4887613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||||| || || || || ||||| || ||||| || ||| Sbjct 4050773 AATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAACCCAG 4050714 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| | |||| || || || |||||||| | || || || || Sbjct 4050713 TGATACCATTGAGAATGTAAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 4050654 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| ||||| || || ||||| | |||||| | |||||||| Sbjct 4050653 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTTGAAGATGGCCGCACTCTTTCTGATTACAA 4050594 Query 23790 CATACAAAAAGAGTCCAC 23807 || || ||||||||||| Sbjct 4050593 TATCCAGAAAGAGTCCAC 4050576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337992178668332