Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq148 127 5e-24 seq117 127 5e-24 seq85 113 1e-19 seq12 105 2e-17 seq41 104 6e-17 seq40 102 2e-16 seq22 102 2e-16 seq52 98.7 2e-15 seq49 96.9 8e-15 seq260 91.5 4e-13 seq82 86.0 1e-11 seq15 86.0 1e-11 >seq148 Length=4887613 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||| || || |||| |||||| || | | ||| | |||||| Sbjct 4050333 AGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCT 4050392 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || ||||| || || Sbjct 4050393 TCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTATCC 4050452 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||| || | ||||| || | ||||| ||| Sbjct 4050453 TGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTCCACCTCCAGGGTGATGGTC 4050512 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 4050513 TTGCCAGTCA 4050522 >seq117 Length=6347111 Score = 127 bits (140), Expect = 5e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||| || || || | ||||| || | | ||| |||||| Sbjct 1554193 AGGACAAGGTGCAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGTGGCCATCT 1554134 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || | ||||| || | || ||||| || || || ||||| || || Sbjct 1554133 TCCAGCTGCTTGCCTGTAAAGATGAGCCTCTGGTGGTCAGGAGGGATGCCTTCTTTATCC 1554074 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| || ||||| || || |||||| || | ||||| ||| Sbjct 1554073 TGGATCTTGGCCTTTACATTCTCAATGGTATCACTGGGTTCCACTTCCAGAGTGATGGTC 1554014 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || ||||| | ||||||||| Sbjct 1554013 TTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTT 1553979 >seq85 Length=11339561 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| |||| || || | |||||| Sbjct 11133872 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCATCCATCT 11133931 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| | ||| ||||| || | || ||||| | || || || |||||||| Sbjct 11133932 TCCAGCTGCTTGCTAGCAAAGATCAGCCTCTGCTGGTCAGTGGGGATGCCCGCCTTGTCT 11133991 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| || ||||||| || ||| || | | |||| ||| Sbjct 11133992 TGGATCTTGGCCTTCACATTCTCAGTGGTGTCACTGGGTTCAACCTTGAGGATGATGGTC 11134051 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || ||||| | |||||| Sbjct 11134052 TTGCCAGTGAGGGTCTTCATGAAGATTTGCAT 11134083 >seq12 Length=34595640 Score = 105 bits (116), Expect = 2e-17 Identities = 140/190 (74%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 225505 ACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCT 225564 || ||||| || || || ||||| ||||| ||||| || | | |||| ||||| || Sbjct 22518577 ACTAGGTGCAGGGTAGACTCTTTCTGGACGTTGTAGTCAGAGAGAGTTTGGCCATCCTCC 22518518 Query 225565 AGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGG 225624 ||||| | || || || || || || || ||||| || || || || |||||||||||| Sbjct 22518517 AGCTGTCTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCTTGG 22518458 Query 225625 ATCTTTTGCT-TCACAGCTTCGATGGTGTC--TGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||| ||| | ||| | ||||||||| |||| | |||| || | ||||| ||| Sbjct 22518457 AT-TTTGGCTCTGACATTCTTGATGGTGTCACTGAGCT--CCACCTCGAGGGTGATGGTC 22518401 Query 225682 TTGCCCGTCA 225691 |||||||||| Sbjct 22518400 TTGCCCGTCA 22518391 >seq41 Length=20498451 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| |||||| || | || || | |||||| Sbjct 848201 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCATCCATCT 848260 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | |||||||| || || || || ||||||||| Sbjct 848261 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCAGGGGGGATTCCCTCCTTGTCT 848320 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 |||||||| ||||| || |||||||| Sbjct 848321 TGGATCTTGGCCTTCATGTTCTCAATGGTGTC 848352 >seq40 Length=22651954 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || || || ||| ||| ||||| || | | ||||| ||||| Sbjct 7366501 AGCACTAGGTGCAGGGTAGACTCT----GGATGTTGTAGTCAGAGAGAGTTCGGCCATCC 7366556 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || || || || || || || || ||||| || || || || ||||||||| Sbjct 7366557 TCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 7366616 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| ||||||||||| || ||||| || | ||||| || Sbjct 7366617 TGGAT-TTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGT 7366675 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| |||| || || | ||| | ||||| Sbjct 7366676 CTTGCCTGTCAGGGTCTTCACGAAGATCTGCAT 7366708 >seq22 Length=29172479 Score = 102 bits (112), Expect = 2e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| ||||| | || ||||| || | | || ||| ||||| Sbjct 11894360 AGCACCAGGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGAGAGAGGTCTGCCATCC 11894419 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || | || || || || || || ||||| || || || || ||||||||| Sbjct 11894420 TCCAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 11894479 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||| ||| || || ||| | | ||||||| || ||||| || | ||||| | Sbjct 11894480 TGGAT-TTTGGCTTTGACATTCTTGGTGGTGTCACTGGGCTCCACCTCGAGGGTGATGGC 11894538 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||||||||| || || | ||| | ||||| Sbjct 11894539 CTTGCCCGTCAGGGTCTTCAGGAAGATCTGCAT 11894571 >seq52 Length=15405845 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| || ||||| | |||| | ||| ||| | | || | |||||||| || Sbjct 7919981 AGGTGAAGGGTGGACGCCCTTTGAATGTTGGCATCAGACCGAGCACATCCATCTTCCAGT 7919922 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||| ||||| ||||| || | || || || || ||| | ||||||||||| | |||| Sbjct 7919921 CACTTACCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAGTTCCTTCCTTGTCCTTGATC 7919862 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| ||| | ||||||||| ||| | || | ||||| ||||| ||| Sbjct 7919861 TTGACCTTTACATTTTCTGTAATGTCTGAGGGTTCAGCCTCGAGTGTGATGGTCTTCCCC 7919802 Query 225688 GTCAAAGTTTTTATGAACACTTGCATTTT 225716 || | |||||||||||| | ||||| || Sbjct 7919801 GTAAGAGTTTTTATGAAAATCTGCATCTT 7919773 >seq49 Length=18206589 Score = 96.9 bits (106), Expect = 8e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| ||||| || || ||| | || ||| ||| ||||| |||||||||||||||| Sbjct 9776662 CACTTCAGTACCTGGCTCCTTACTCTGGCTGTTCTATGGGAGAGTATTTTAGAGATAATG 9776603 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | ||||||||||| |||||||| || || ||| ||||| |||| Sbjct 9776602 GCAAACATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 9776557 >seq260 Length=290759 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| || ||||| |||||||||||||| ||||| || || ||||| || ||||| | Sbjct 60253 ATACTTCTGGGTGACCGAAAAATCAGAATAAGTGTTGGTATAGAATAGGGTCTCCTCCTC 60312 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | ||| || |||||| | || |||| |||| |||||||||| Sbjct 60313 CAGCTGGGTCGAAAAAGGTCGTGTTAAGGTTTCGGTCAGTTAAAA 60357 >seq82 Length=11338420 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| || ||||| || || |||| ||||| | || | || ||||| Sbjct 1447546 AGCACCAGGTGTAGGGTGGACTCCTTCTGGATGTTGTAGTTGGACGGGGTGTGTTCATCT 1447487 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | ||||| || || ||||| || | || ||||| || | || | ||||||||| Sbjct 1447486 TCCAATTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGAGATGGCCTCCTTGTCT 1447427 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||| | || ||||||| || ||| |||| | ||||| ||| Sbjct 1447426 TGGATCTTGGCCTTCATATTCTCAGTGGTGTCACTGGGTTCACCGTCGAGGGTGATGGTC 1447367 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 | ||||| | || || ||||| | |||||| Sbjct 1447366 TGACCCGTGAGGGTCTTCATGAAGATTTGCAT 1447335 >seq15 Length=34776858 Score = 86.0 bits (94), Expect = 1e-11 Identities = 147/212 (69%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| | ||||| || || |||| |||| || | || || | |||||| Sbjct 23700282 AGCACCAGGTGCAAGGTGGACTCCTTCTGGATGCTGTAGTCAGACAGGGTGCGTCCATCT 23700341 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| | || ||||| || | || |||| ||| ||| | | ||||||||| Sbjct 23700342 TCCAGCTGCTTGCTGGCAAAGATCAGCCTCTGCTGGTTGGGGGGA-TGCTCTCCTTGTCT 23700400 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| | ||||| || || ||| || || | ||||| | Sbjct 23700401 TGGATCTTGGCCTTGACATTCTGAATGGTTTCACTGGGTTCTACTTCGAGGGTGATGATG 23700460 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || ||||| | |||||| Sbjct 23700461 TTGCCAGTAAGGGTCTTCATGAAGATTTGCAT 23700492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192466583814926