Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq41 154 1e-32 seq17 150 1e-31 seq14 82.4 6e-11 >seq41 Length=20498451 Score = 154 bits (170), Expect = 1e-32 Identities = 133/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||||||| || | |||||| ||||| || | ||||||||| ||||| |||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || ||||||||||| || | |||||| |||||||| || |||||||||| | Sbjct 11146837 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACC 11146778 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 11146777 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAGA 11146733 Score = 100 bits (110), Expect = 2e-16 Identities = 112/148 (76%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || ||||| || |||||||| || || | | | || ||| Sbjct 11142376 AAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTCCCCTTCCTGGCGG--CTGGAAA 11142319 Query 30077 CCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCT 30134 ||| |||||| ||||||| ||| || ||||| ||||||||||| || ||||| Sbjct 11142318 ACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCATCCCAGATCTTCACGCCCTTGG 11142259 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||||| ||||||||| || Sbjct 11142258 AAGACAGTTCTTTGGCGTTTGTGGATCC 11142231 >seq17 Length=29327949 Score = 150 bits (166), Expect = 1e-31 Identities = 267/393 (68%), Gaps = 30/393 (8%) Strand=Plus/Plus Query 29612 GGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAG 29671 ||||| |||| || || | || |||||| | ||||||| || | ||| | ||||| Sbjct 14730685 GGAAAAGGTC--GGTTCTCGCTGAAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAA 14730742 Query 29672 ACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCC 29731 | || ||||||| || || || ||||| || || || | | || ||||| || || Sbjct 14730743 ATATGTGCATCTCTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCG 14730802 Query 29732 ATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCC 29791 | |||||| ||||| || | || |||||||||||| || || ||||||||| Sbjct 14730803 ACCATGTAGGTGAGCAGGGCGTTGCTGGCGATGTT---------GCCCAGGCCCATGTCC 14730853 Query 29792 CCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATG 29851 | || | |||||| |||||||| || ||||||||| |||||| ||||| || | | Sbjct 14730854 CTGGAACGCTGGTACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGG 14730913 Query 29852 GCATGGCACGGAGGAAG----------GG---------CCATGAGACCCAAGTCTTTGGG 29892 || ||||| ||||| || || |||| ||| | |||||| | Sbjct 14730914 GCGTGGCAGGGAGGCAGCACCATCAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAG 14730973 Query 29893 GTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGC 29952 |||||| ||||||| |||||| | ||||| || |||||| | ||||| ||| | Sbjct 14730974 GTTCCAAGCACACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCAC 14731033 Query 29953 GTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 29985 || |||||||| ||||| || |||||||| Sbjct 14731034 TTTCTGCAGCTGGTCCACTTCCTGACCCGAGTA 14731066 >seq14 Length=33454342 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || || || |||| || | ||||| ||| ||||| |||||| || || Sbjct 1459885 TTGAGTTCTCTACTTAGTACTATATTAATTCTGTCCTTCAAAGGTCGATTCTTCTCAGGA 1459944 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| || ||||| ||||||| ||||| |||||| Sbjct 1459945 ATGGAGAACCAGGTCTTCCTTCCCATAATCACCAGATTCTGTTTACCT 1459992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406142265967894