Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030652.1 Length=42140 Score E Sequences producing significant alignments: (Bits) Value seq371 242 1e-59 >seq371 Length=40469 Score = 242 bits (268), Expect = 1e-59 Identities = 301/411 (73%), Gaps = 12/411 (3%) Strand=Plus/Minus Query 11328 TGAGTAAATACAACGCTAAGAAAGTTGAGTACAAAGGAATTGTATTTGATAGCAAAGTTG 11387 ||||||||||||| || |||||||||||||| ||||| || || ||||||||||||| Sbjct 748 TGAGTAAATACAATGCAAAGAAAGTTGAGTATAAAGGTATAACGTTCGATAGCAAAGTTG 689 Query 11388 AGTGTGAATATTACCAATATTTAGAA-----AGTAAT-ATGAATGGCACTAATTATGATC 11441 | ||||| || ||| | || |||||| | |||| || |||| |||||| Sbjct 688 AATGTGATTACTACAAGTACTTAGAACAACGATTAATTATAGATGG------TTATGACT 635 Query 11442 ATATCGAAATACAACCGAAATTCGAATTATTACCAAAACTAGATAAACAACGAAAGATTG 11501 ||||||| |||||||||| || || || |||| ||| | | ||||||||| || | || Sbjct 634 ATATCGAGATACAACCGAGATATGAGCTAATACCTAAATTTGGTAAACAACGTAAAACTG 575 Query 11502 AATATATTGCAGACTTCGCGTTATATCTCGATGACAAACTGATTGAAGTTATCGACATTA 11561 |||||||||||||||| || ||| | ||||| |||||||||| || ||| ||| Sbjct 574 AATATATTGCAGACTTTGCACTATGGAATAACGACAAGTTGATTGAAGTCATAGACGTTA 515 Query 11562 AAGGTATGCCAACCGAAGTAGCAAAACTTAAAGCTAAGATTTTCAGACATAAATACAGAA 11621 |||| ||| | || ||| || || | || || ||| | || ||| || ||| | Sbjct 514 AAGGCATGGCGACAGAAACGGCTAAGTTAAAGGCGAAGTTATTTAGATATCTATATCCCA 455 Query 11622 ACATAAAACTCAATTGGATATGTAAAGCACCTAAGTACACAGGCAAAACATGGATTACTT 11681 | ||||||| | |||||||||||||||||||||||||||||| ||| ||| | || | Sbjct 454 ATGTAAAACTTACTTGGATATGTAAAGCACCTAAGTACACAGGTAAAGACTGGGTAACGT 395 Query 11682 ACGAGGAATTAATTAAAGCAAGACGAGAACGCAAAAGAGAAATGAAGTGAT 11732 | || ||||| | || | ||||| |||||||| | || | || ||||| Sbjct 394 ATGAAGAATTGAACAAGGTGAGACGCGAACGCAAGAAAGCTAAGAGGTGAT 344 Score = 98.7 bits (108), Expect = 3e-16 Identities = 182/264 (69%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 7648 CGTTATTATATTGGGCTACAATCAACCGCAACTGTGTAATTTGCGGAAAGCCTCACGCTG 7707 |||| ||||| |||||| ||||| | || || || || || || |||| | || | Sbjct 3691 CGTTTTTATACATGGCTACTATCAAGAGAAAGTGCGTTATCTGTGGCAAGCAT---GCAG 3635 Query 7708 ACCTAGCACATTACGAAGCAGTAGGTAGAGGCATGAACAGAAACAAGATGAATCACTACG 7767 | ||||||||||| ||||||||||| | || |||||| |||||| | || | Sbjct 3634 AGCTAGCACATTATCAAGCAGTAGGTCGTGGACGCAACAGACGCAAGATAGAACATTTTA 3575 Query 7768 ACAAACATGTATTAGCGTTATGTCGCGAACATCACAACGAGCAACATGCAATTGGTGTTA 7827 |||| | ||||||| ||||| | ||||| || |||||||| | || || | Sbjct 3574 ACAACAAAGTATTAGGACTATGTTCCTTTCATCATAAAGAGCAACACGACATGGGCATGG 3515 Query 7828 AGTCGTTT-GATGATAAATATCACTTGCATGACTCGTGGATAAAAGTTGATGAGAGGCTC 7886 | | |||| || | || ||||| || | | || ||| | | ||||| ||||| || Sbjct 3514 A-TAGTTTCAATAAGAAGTATCATTTAGAAAATTCATGGGTGGACGTTGACGAGAGACTA 3456 Query 7887 AATAAAATGTTGAAAGGAGAGAAA 7910 || |||||| ||||||||| |||| Sbjct 3455 AACAAAATGCTGAAAGGAGTGAAA 3432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134719634124396