Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17 156 3e-33 seq41 129 4e-25 >seq17 Length=29327949 Score = 156 bits (172), Expect = 3e-33 Identities = 334/501 (67%), Gaps = 30/501 (6%) Strand=Plus/Plus Query 26998 ACTGCCATCCTCATCCTTATGGCGGGATGAGGGTCGTAACCCTCCAGGGAGAAATCCTCT 27057 || ||||| |||| | || || ||||| || | ||| || ||||| || | || Sbjct 14730577 ACAGCCATTTCCATCTTAATAGCAGGATGTGGATTGTACCCTTCCAGCTGAAAGTGTTCA 14730636 Query 27058 GCCTTAAAGTCGTCCAGGCTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTG 27117 || | ||||| || | | |||| || | | || || || | ||||| |||| Sbjct 14730637 GCTGTGAAGTCATCAATGGTCTCAACTGTTCGAAGGATTCTGAGCTTTGGAAAAGGTC-- 14730694 Query 27118 GGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCT 27177 || || | || |||||||| |||||||| || | ||||| |||||| | || || ||| Sbjct 14730695 GGTTCTCGCTGAAGCTGAGTTTTCAGCGGCTCAATGTGATTCAGGTAAATATGTGCATCT 14730754 Query 27178 CCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTG 27237 | || || || ||||| || || || | | || ||||| || || | |||||| ||| Sbjct 14730755 CTCAAAGTATGTACAAAGTCACCTGGCTGCGGGCCAGTGACATGGGCGACCATGTAGGTG 14730814 Query 27238 AGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGG 27297 || || | || |||||||||||| || || |||||||||| || | |||| Sbjct 14730815 AGCAGGGCGTTGCTGGCGATGTT---------GCCCAGGCCCATGTCCCTGGAACGCTGG 14730865 Query 27298 TAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGA 27357 || ||||| || || ||||||| | ||||| ||||| || | ||||||||| ||| Sbjct 14730866 TACAGCTGGCAGGACGGCTCTCCGTTCACCACGTAGAACTGGCAGAGGGCGTGGCAGGGA 14730925 Query 27358 GGAAGAGCCAT--GAGG---------CC--------CAAGTCTTTGGGGTTCCAGGCGCA 27398 || || |||| |||| || | |||||| ||||||| || || Sbjct 14730926 GGCAGCACCATCAGAGGGAGGTAGCACCATCAGAGGGAGGTCTTTCAGGTTCCAAGCACA 14730985 Query 27399 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 27458 || |||||| | ||||| || |||||| | ||||| ||| | || |||||||| Sbjct 14730986 CATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAGTCACTTTCTGCAGCTG 14731045 Query 27459 ATCCACCCCCATCCCCGAGTA 27479 ||||| || |||||||| Sbjct 14731046 GTCCACTTCCTGACCCGAGTA 14731066 >seq41 Length=20498451 Score = 129 bits (142), Expect = 4e-25 Identities = 127/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||||||| || | |||||| ||||| || | ||||||||| ||||| ||||| Sbjct 11146897 AGGCCAGTGACGTGGGCGACCATGTAGGTGAGCAGGGCGTAGCTGGCAATGTTGAAGGGC 11146838 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || ||||||||||| || | |||||| ||||| || || |||||||| | Sbjct 11146837 ACGCCCAGGCCCATGTCCCCGGAGCGCTGGTACAGCTGGCAGGACAGCTCTCCGTTCACC 11146778 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 ||||| ||||| || | ||| ||||| ||||| || ||||| || Sbjct 11146777 ACGTAGAACTGGCAGAGGGCATGGCAGGGAGGCAGCGCCATCAG 11146734 Score = 104 bits (114), Expect = 2e-17 Identities = 126/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||| || |||| || || || ||||||||||| ||||| || ||||| || |||||||| Sbjct 11142398 CATATCTTTGTAGTCAGCCCCAAAATGCCTCCACTGGAAGCCATACACGGGACCCAGGTC 11142339 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCT--TGTCCAAAAAGTCTCTGGAACCGTTGGCG 27606 || || | | | || ||| ||| |||||| ||||||| ||| || ||||| Sbjct 11142338 CCCTTCCTGGCGG--CTGGAAAACCCCAGGCTGTCCAGGAAGTCTCGGGACCCATTGGCA 11142281 Query 27607 TCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAccc 27656 ||||||||||| || ||||| || || ||||||| ||||||||| || Sbjct 11142280 TCCCAGATCTTCACGCCCTTGGAAGACAGTTCTTTGGCGTTTGTGGATCC 11142231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369488155252499