Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030911.1 Length=45858 Score E Sequences producing significant alignments: (Bits) Value seq372 194 5e-45 >seq372 Length=36520 Score = 194 bits (214), Expect = 5e-45 Identities = 312/445 (70%), Gaps = 10/445 (2%) Strand=Plus/Plus Query 5822 AGGTCGGCGGCGTGCCGGTCCTCGAAGACGGAATGGAGCTGAAGCGTGTCGGCTTCAGCG 5881 ||| ||||||||||||| | |||||||| || ||||| |||| || ||||| ||| | Sbjct 28641 AGGGCGGCGGCGTGCCGCTGCTCGAAGATGGTATGGAAATGAAACGCGTCGGGTTCGCGG 28700 Query 5882 CCAAGGACGAAGACTACGTCGAAGGATCGAAGCTCGCTCTGACGACTGTCGCGTCCGTCT 5941 | || || ||||| | |||||| | || ||||| || || || |||||||| || | Sbjct 28701 CGAAAGAAGAAGAGTTCGTCGACTCGGCAAAACTCGCACTTACCACGGTCGCGTCGGTTT 28760 Query 5942 ACCACGTCAACCCGACCATGCTCGGACTGTTGGATAACGCCAACTACTCGAACGTGAAGG 6001 ||||| |||||||||| |||||||| || |||||||||| ||||| |||||||| | Sbjct 28761 ACCACATCAACCCGACAATGCTCGGCCTACTGGATAACGCGAACTATTCGAACGTTCGCG 28820 Query 6002 AATTCCGAAAGGGGCTGTACGGCGACACACTTGGGCCGATCAT--CGCAATGATCGAAGC 6059 ||||||| ||| ||||||||| | || || || ||||| |||| ||||| | Sbjct 28821 AATTCCGGCGAATGCTTTACGGCGACTCGCTCGGCCCCATCATTCGGCAA--ATCGAGGA 28878 Query 6060 GCGTCTGAACGCGTTCCTGTTGCCGATGCTCGAAGCCGACGAAGACGAGTATGTCGAGTT 6119 ||| | || |||||||| |||||| ||||| ||| ||||| | || |||| || Sbjct 28879 CCGTTTAAATGCGTTCCTCATGCCGAAGCTCGGCGCCCCCGAAGGTCAATACATCGAATT 28938 Query 6120 CAATATCCGCGAGAAACTGGAAGGCGACTTCGCCGAACAGGGTAACCAGCTCTACCAGGC 6179 || | | ||| || || || ||||| ||||| | | | | ||||| || Sbjct 28939 TAACCTTCACGAAAAGCTTCGCGGTTCCTTCGAAGAACAAG---CCGCGGTTTACCAAGC 28995 Query 6180 ---AGCCGGCGGACCGTACATGACGCGCAACGAAGTTCGAGCGCGACAGAACCTTCCGCG 6236 | || || |||| |||||| ||||||| || | || | ||| | ||| Sbjct 28996 CGGTGTTGGTGGTCCGTGGATGACGGTTAACGAAGCGCGTTCACGCGAAAACATGCCGAC 29055 Query 6237 TATCGAAGGCGCGGACGAGCTGATC 6261 ||||||||||| ||||| |||||| Sbjct 29056 TATCGAAGGCGGCGACGACCTGATC 29080 Score = 134 bits (148), Expect = 4e-27 Identities = 413/633 (65%), Gaps = 13/633 (2%) Strand=Plus/Plus Query 7844 ACCGACGAGGTCCGGAAGATCGCCGCGTGGATCGGCTTCACGGACGAGATTCT-GGAAGA 7902 |||||| | |||| |||||||||| |||||| |||| ||||| ||||| |||||| Sbjct 30963 ACCGACCCGATCCGAAAGATCGCCGGCTGGATCAAGGTCACCGACGA-ATTCTTGGAAGA 31021 Query 7903 CATGCCCCTCTGGGTGTCCGAGATCAATCAGCGCTTGCTCTACAAGCTCGCGGTGAAGGA 7962 | | || ||| | ||| || ||| | | ||| | | |||| || || || || Sbjct 31022 CCTTCCATTCTTGAAGTCGGAAATCGACAACCGCCTTATGCACAAACTGTCGATGTTCGA 31081 Query 7963 AGAGCTTCAGCTACTCCGCGGTTCGGGTGCCGGCCAGAACATTCTGGGTCTGCTCAACCG 8022 |||| | ||||| || ||||| || || ||| ||| | | |||||||| ||||| Sbjct 31082 AGAGTTCCAGCTGCTTCGCGGCGACGGCGCTGGCACCAACCTGCGCGGTCTGCTGAACCG 31141 Query 8023 TGACGGCGTGCAGACC---ATCGCCGCCGGCGCGGGCGACCAGGAGGACGTCGAGAACAT 8079 |||||| |||||| | | ||| ||||| || | |||| || |||| | | Sbjct 31142 TGACGGTGTGCAGGTCGAAACCGCGGCCGGTGCTGACGACTTGGCCGACGCGGTG----- 31196 Query 8080 CTTCCGGGCGCAGACGCTCATTTCGCTTGCCACCGACTACCAGGCCGACGCGGTGCTGGT 8139 ||||| || || || || || |||||| | ||||||| || | | Sbjct 31197 -TTCCGCTCGACCACCAAGATCGCGACCGCGACCGACCTCACCGCCGACGGTGTCGTCAT 31255 Query 8140 GAATCCGTTCGACTACGAGCGGTTCCGTCTCGGCAAGGATGCGAACGAGCAGTACTACGG 8199 | ||| |||| ||||| | || || || || | |||| ||||||||||| Sbjct 31256 TCACCCGCTCGATTACGAAGAGCAGCGCCTACGCCGCGACGGCAACGGCCAGTACTACGG 31315 Query 8200 CGGCGGCTACTTCATGGGCCAGTACGGCGGCGGGACCGTGGTCGAGAATCCGCCCCTGTG 8259 |||||| | |||| |||| |||||| ||| | | | | || || || ||||| Sbjct 31316 CGGCGGTTTCTTCCAGGGCTCCTACGGCAACGGCGGCATTTTGCAAAACCCACCACTGTG 31375 Query 8260 GGGTCTGCGGACCGTGGTCACTCGCGCGGTCGCGAAGGGCGAAGCCG-TGGTCGGCAACT 8318 ||| ||| ||||| || || | |||| || | | | |||||| | |||||| | Sbjct 31376 GGGCCTGAACACCGTTGTTACCCCGGCGG-CGGAACGCGGAAAGCCGATCGTCGGCGCGT 31434 Query 8319 TCGCGCAGGCCGCGACCATGTACCGCAAGGGCGGCGTGAAGGTCGATTCGACCATGAGCG 8378 ||| | | | ||| ||||||| |||||||| || ||| | |||| | | Sbjct 31435 TCGACCTCGGTTCCACCGTGTACCGAAAGGGCGGTGTTCGCGTCTCTGCGACTTCGTCCA 31494 Query 8379 ACGGCGACGACTTCGTCCACAACAAGGTGAAGACGCGCGTGGAAGAGCGGATCGCTCTCG 8438 ||| ||||| ||| || |||||||||||| | |||| ||||||||| |||| || | Sbjct 31495 ACGAGGACGATTTCATCAACAACAAGGTGACCATTCGCGCGGAAGAGCGAATCGGCCTTG 31554 Query 8439 CGGTCCGTCAGCCTCAGGCGTTCGTCAAGCTCG 8471 | || || || || ||||||||| ||| Sbjct 31555 CTGTGCGCGTCCCGTCTGCCTTCGTCAAGGTCG 31587 Score = 82.4 bits (90), Expect = 2e-11 Identities = 216/316 (68%), Gaps = 14/316 (4%) Strand=Plus/Plus Query 6405 GACGACGGACTCGAAGAGGGC-GAGTTCATCGGCTACGCGAGCGTGTTCGGGAACAAGGA 6463 |||||||| | | |||| || || ||| | ||| || |||||||| ||| || Sbjct 29692 GACGACGG-CACCAAGACCGCCGAATTCGAAGCCTATGCTTCCGTGTTCGACAACGTCGA 29750 Query 6464 TTCGTACGGCGACGTCGTCGAGCCGGGCGCGTTCGCGGACTCGCTGAAGGCTTGGGACGA 6523 ||| || || || || | | | |||||||||||| |||||| | ||||| | Sbjct 29751 TTCCTATGGGGATGTGATGGTGAAGGGCGCGTTCGCTCGCTCGCTCGCCGATTGGGCGGC 29810 Query 6524 GTCGGGATCGGTGATCCCG---CTGTACTGGGCGCACAACACGAGCGATCCGGACTACAA 6580 | | || ||||||| |||| |||| ||||||| | || ||||||||||| Sbjct 29811 GAAAGACGCGCCGATCCCGGCCCTGTG--GGGC-CACAACATGTCTGACCCGGACTACAA 29867 Query 6581 CATCGGCCACGTCGTGAAGAGCGAAG-AGGAC-AGCACGGGCTGGAAGGTCCGGGGGAAG 6638 |||||| ||||| | | |||||| ||||| | |||||||| | || | | | Sbjct 29868 CATCGGTCACGTGCTCGAC-GCGAAGGAGGACGATCACGGGCTTCGCGTTC-GTGTGTCC 29925 Query 6639 ATCGACCTGGATTCGCCGAAGGG-GCCACAGGTCTACCGGCTGATCAAGGGCCGGCGCGT 6697 |||||||| |||||||||||||| || || || || ||||| ||||| |||||| Sbjct 29926 ATCGACCTCGATTCGCCGAAGGGCGCGAC-CGTATATCGGCTACTCAAGTCGAAGCGCGT 29984 Query 6698 CGGTCAAATGTCGTTC 6713 | ||||||||||| Sbjct 29985 GCGCGAAATGTCGTTC 30000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146616636634360