Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_030932.1 Length=43505 Score E Sequences producing significant alignments: (Bits) Value seq372 221 3e-53 >seq372 Length=36520 Score = 221 bits (244), Expect = 3e-53 Identities = 315/442 (71%), Gaps = 6/442 (1%) Strand=Plus/Plus Query 4371 AGGTCGGCGGCGTGCCGCTGCTCGAAGATGGAATCGAGCTGAAGCGCGTCGGATTCTCGG 4430 ||| ||||||||||||||||||||||||||| || || |||| |||||||| ||| ||| Sbjct 28641 AGGGCGGCGGCGTGCCGCTGCTCGAAGATGGTATGGAAATGAAACGCGTCGGGTTCGCGG 28700 Query 4431 CGAAGGAAGAGGATTACGTCGAGGGTTCGAAGCTGGCGCTTCAGACGGTGGCGAGTGTCT 4490 |||| ||||| || | |||||| | || || || ||| ||||| ||| || | Sbjct 28701 CGAAAGAAGAAGAGTTCGTCGACTCGGCAAAACTCGCACTTACCACGGTCGCGTCGGTTT 28760 Query 4491 ATCACGTAAACCCGACCATGCTCGGGTTGCTCGATAATGCGAACTATTCGAACGTACGCG 4550 | ||| | |||||||| |||||||| | || ||||| ||||||||||||||||| |||| Sbjct 28761 ACCACATCAACCCGACAATGCTCGGCCTACTGGATAACGCGAACTATTCGAACGTTCGCG 28820 Query 4551 AGTTTCGGCGCGGACTGTACGGGGATACGCTCGGGCCGATCATTTCTATGATCGAGGCGA 4610 | || ||||| || ||||| || ||||||| || |||||| ||||||| Sbjct 28821 AATTCCGGCGAATGCTTTACGGCGACTCGCTCGGCCCCATCATTCGGCAAATCGAGGACC 28880 Query 4611 GATTGAATGCTTTCCTACTGCCAAAGCTCGGCGCGGCTGACGGCGAATACGTCGAGTTCA 4670 | || ||||| ||||| |||| ||||||||||| | || || ||||| |||| || | Sbjct 28881 GTTTAAATGCGTTCCTCATGCCGAAGCTCGGCGCCCCCGAAGGTCAATACATCGAATTTA 28940 Query 4671 ATATTCGCGAGAAGCTCGAAGGCAGTTTCGAGGAACAAGGAAACATTCTGTATCAGGC-- 4728 | ||| ||| ||||| || ||||| ||||||| | | || || || Sbjct 28941 ACCTTCACGAAAAGCTTCGCGGTTCCTTCGAAGAACAAG---CCGCGGTTTACCAAGCCG 28997 Query 4729 -TGCGGGCGGGCCGTACATGACTCGCAACGAAGTTCGGTCGCGGCAGAACTTGCCGCGCA 4787 || || || |||| ||||| ||||||| || || || | ||| ||||| | Sbjct 28998 GTGTTGGTGGTCCGTGGATGACGGTTAACGAAGCGCGTTCACGCGAAAACATGCCGACTA 29057 Query 4788 TCGAAGGCGCGGACGAGTTGAT 4809 ||||||||| ||||| |||| Sbjct 29058 TCGAAGGCGGCGACGACCTGAT 29079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139087414766166