Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_031028.1 Length=45285 Score E Sequences producing significant alignments: (Bits) Value seq372 248 3e-61 >seq372 Length=36520 Score = 248 bits (274), Expect = 3e-61 Identities = 371/523 (71%), Gaps = 9/523 (2%) Strand=Plus/Plus Query 4527 GACCGACGCGGCACGCAAGATCGCCGGTCACATCAAGTTCTCCGACGAGTTCCTCGAGGA 4586 ||||||| || || ||||||||||| |||||| || ||||||| ||| | || || Sbjct 30962 GACCGACCCGATCCGAAAGATCGCCGGCTGGATCAAGGTCACCGACGAATTCTTGGAAGA 31021 Query 4587 CCTCGCCTTCCTCAAGACCGAGGTGGACGAGCGACTCCTGAACCTGCTCGCGATGCGCGA 4646 ||| | ||| | ||| | || | ||| | || || || || || ||||| ||| Sbjct 31022 CCTTCCATTCTTGAAGTCGGAAATCGACAACCGCCTTATGCACAAACTGTCGATGTTCGA 31081 Query 4647 GGAAGCCCAGCTGCTGAACGGTGACGGCACCGGTCAGAACCTGCTCGGCCTGCTCAACCG 4706 || ||||||||| ||| |||||| | || ||||||| ||| ||||| ||||| Sbjct 31082 AGAGTTCCAGCTGCTTCGCGGCGACGGCGCTGGCACCAACCTGCGCGGTCTGCTGAACCG 31141 Query 4707 CTCGGGTGTCCAGGTCGAGAACTCGGCCAACTCGGCCGACGACCCGGACGCGGTGTTCCG 4766 ||||| |||||||| | | ||||| | | |||| | |||||||||||||| Sbjct 31142 TGACGGTGTGCAGGTCGAAACCGCGGCCGGTGCTGACGACTTGGCCGACGCGGTGTTCCG 31201 Query 4767 CGCGATCACCAAGGTCTCGACCGCGACCGAGCTCTCGGCTGACGGCATCGTGATCCACCC 4826 | ||| ||||||| || ||||||||||||| ||| | || ||||| |||| || ||||| Sbjct 31202 CTCGACCACCAAGATCGCGACCGCGACCGACCTCACCGCCGACGGTGTCGTCATTCACCC 31261 Query 4827 GCTGGACTACCAGAAGTTCCGCCTCACCAAGGACGGCAACGGACAGTACTTCGGCGGTGG 4886 ||| || ||| | || ||||| | ||||||||||| ||||||| |||||| || Sbjct 31262 GCTCGATTACGAAGAGCAGCGCCTACGCCGCGACGGCAACGGCCAGTACTACGGCGGCGG 31321 Query 4887 CTTCTTCGAGGGCCAGTACGGCAACGGTGGTGGTCTCGCCGCACAGCCTCCGCTCTGGGG 4946 |||||| ||||| ||||||||||| || | | || | | || || || ||||| Sbjct 31322 TTTCTTCCAGGGCTCCTACGGCAACGGCGG-CATTTTGC--AAAACCCACCACTGTGGGG 31378 Query 4947 CCTGCGCACCATCGTCACCCCGAACGTGGCGG---TCGGCAAGCCGCTCGTCGGCGCGTT 5003 |||| |||| | || |||||| | ||||| ||| |||||| ||||||||||||| Sbjct 31379 CCTGAACACCGTTGTTACCCCG---GCGGCGGAACGCGGAAAGCCGATCGTCGGCGCGTT 31435 Query 5004 CCGCCAGGCAACGACCCTCTACCGCAAGGGTGGAGTCCGGGTC 5046 | || | | ||| | ||||| ||||| || || || ||| Sbjct 31436 CGACCTCGGTTCCACCGTGTACCGAAAGGGCGGTGTTCGCGTC 31478 Score = 138 bits (152), Expect = 3e-28 Identities = 305/453 (67%), Gaps = 17/453 (4%) Strand=Plus/Plus Query 2560 GGGGGTGGCGTTCCCCTGCTCGAAGACGGCATGACGCTGCAGCGAGTGGGTTTCTCGGCC 2619 || || ||||| || ||||||||||| || ||| || | || || || ||| |||| Sbjct 28643 GGCGGCGGCGTGCCGCTGCTCGAAGATGGTATGGAAATGAAACGCGTCGGGTTCGCGGCG 28702 Query 2620 AAGGAGGAACAGTTCGTCGAGGGTACCAAGCTGAGCCTGCAAACGGTGGCCTCGGTCTAC 2679 || || ||| |||||||||| | || || || ||||| || ||||| ||| Sbjct 28703 AAAGAAGAAGAGTTCGTCGACTCGGCAAAACTCGCACTTACCACGGTCGCGTCGGTTTAC 28762 Query 2680 CACGTGAACCCCACGATGGTGGGTCTGCTGGACAACGCGAACTACTCGAACGTGCGCGAG 2739 ||| | ||||| || ||| | || || ||||| ||||||||||| |||||||| ||||| Sbjct 28763 CACATCAACCCGACAATGCTCGGCCTACTGGATAACGCGAACTATTCGAACGTTCGCGAA 28822 Query 2740 TTCCGGCGCTCGCTGTACGGCGAGACTCTCGGACCTCGCCTGGTGGAGCTGGAGCAGCGG 2799 |||||||| ||| |||||||| | ||||| || | | | | | ||| | || Sbjct 28823 TTCCGGCGAATGCTTTACGGCGACTCGCTCGGCCCCATCATTCGGCAAATCGAGGACCGT 28882 Query 2800 CTCAACGAGTTCCTGTTGCCGCTGCTGGGCTTCGAC-AACGCCAAGTACTACTTGGAGTT 2858 | || | |||||| ||||| ||| ||| | | || | ||| ||| | || || Sbjct 28883 TTAAATGCGTTCCTCATGCCGAAGCTCGGCGCCCCCGAAGGTCAA----TACATCGAATT 28938 Query 2859 TGACGTGGCCTCGCG----GCTGCGCGGCTCGGTGGACGAGCAGGCCAAGGTCCTGCAGT 2914 | || | || || ||| ||||| || | || || || ||| ||| || Sbjct 28939 TAAC----CTTCACGAAAAGCTTCGCGGTTCCTTCGAAGAACAAGCCGCGGTTTACCAAG 28994 Query 2915 CGGCAGTCGGTGGTCCCTGGCTCACGGTCAACGAGGCTCG--CGCGCAAAACAACCTGCC 2972 | | || |||||||| ||| | ||||| ||||| || || | ||| || ||| |||| Sbjct 28995 CCGGTGTTGGTGGTCCGTGGATGACGGTTAACGAAGCGCGTTCACGCGAA--AACATGCC 29052 Query 2973 CGCGCTCGAGGGTGGAGACGAGCTGATCCGGCC 3005 | |||| || || ||||| |||||||| || Sbjct 29053 GACTATCGAAGGCGGCGACGACCTGATCCGACC 29085 Score = 93.3 bits (102), Expect = 1e-14 Identities = 145/206 (70%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 3204 TTCGAGGCCTACGCCTCGGTGTTCAACAACCGCGACAGCTACGGTGACGTGATGCGGAAG 3263 ||||| ||||| || || |||||| ||||| ||| ||| || || |||||| |||| Sbjct 29716 TTCGAAGCCTATGCTTCCGTGTTCGACAACGTCGATTCCTATGGGGATGTGATGGTGAAG 29775 Query 3264 GGGTCCTTCAAGAACACTCTCGCCGAGTGGTTCAAGGAAGGCCAGACCCGTACCCTGCCG 3323 || | ||| | | |||||||| ||| | ||| | | ||| ||| ||| Sbjct 29776 GGCGCGTTCGCTCGCTCGCTCGCCGATTGGGCGGCGAAAGACGCG--CCGATCCCGGCC- 29832 Query 3324 CTGCTGTGGGGCCACAACCTTTCGGACCCCAACTTCAACCTGGGTGGCGTGTTCGACGCC 3383 ||||||||||||||| | || ||||| ||| |||| | ||| |||| ||||||| Sbjct 29833 ---CTGTGGGGCCACAACATGTCTGACCCGGACTACAACATCGGTCACGTGCTCGACGCG 29889 Query 3384 AAGGAGGACGACAACGGCCTGCGGGT 3409 ||||||||||| |||| || || || Sbjct 29890 AAGGAGGACGATCACGGGCTTCGCGT 29915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144783128716606