Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_031247.1 Length=50636 Score E Sequences producing significant alignments: (Bits) Value seq372 156 1e-33 >seq372 Length=36520 Score = 156 bits (172), Expect = 1e-33 Identities = 327/483 (68%), Gaps = 17/483 (4%) Strand=Plus/Plus Query 42978 ATCCTCGACGAATGCGGGCGCGTAACGCGCGGCTGGGTCGTCGCGACCGTCGCGTACCAG 43037 ||| | | |||||| ||||||||| | ||||||||||||||||||| | | |||||| Sbjct 17141 ATCATGGCCGAATGTGGGCGCGTATCCCGCGGCTGGGTCGTCGCGAATATGGACTACCAG 17200 Query 43038 CACGCATACCAGCTCGAGGTCGACCCGCCGGCGTGGCTGCGCACCTTGCGGATCGGGGCG 43097 ||||| | |||| | ||| ||||||||| ||||| | ||||||||| | | Sbjct 17201 CACGCCGCGAAATTCGACGCCGAACCGCCGGCGGGGCTGACGATGAAGCGGATCGGTGTG 17260 Query 43098 TGGGTCAAGACAAACCCGATGCCGCAAATCAGTGCCGACCGTCCGGGCCAAGGCTGGGAA 43157 ||| | || | | |||||||| ||| ||| | ||||| |||| || || |||||| Sbjct 17261 TGGATGAAAAAAGCACCGATGCCACAACTCACGGGTGACCGGCCGGCGCAGGGGTGGGAA 17320 Query 43158 GCGATCGCCTACATGCACCGAATCGACTCGCCGCCG-GCGTGGAACGGCGGCGGCAAGTC 43216 || ||||| ||||||||||| |||| || | |||| ||||||||| | | Sbjct 17321 GCAATCGCATACATGCACCGGGACGAC-CGTAAAAGCTTATGGACCGGCGGCGGTCTGGC 17379 Query 43217 CGGTAACTACGTGCTGCCGACCGAACAGGGGACCGGGCATCCGACCGCGAAACCGCTGTC 43276 || |||| || || | | ||| ||| || || || |||| ||| | Sbjct 17380 TGGAAACTTTTACCTTCCCGCTTCGCGCGGGCTCGGTCACCCCACATCGAAGCCGATCGG 17439 Query 43277 GATGGTGCAAGACTTCGTTCGCCGGTTCA-----CAC--TCCCGG-GCGGC-------AT 43321 ||||| || ||| | | |||||| ||| ||||| ||| | | Sbjct 17440 CATGGTTGAAACCTTTATCGACTGGTTCACCGCGCACGAACCCGGCGCGCCCGCTCCGGT 17499 Query 43322 AGTCCTCGACCCGTTCGCCGGGGGCGGCACTACGTTGCGGGCCGCGGCGAACGAAGGCCG 43381 || |||||||||||||||||| |||||| ||| | ||||||||| |||| ||||| Sbjct 17500 GGTGCTCGACCCGTTCGCCGGGTCCGGCACGACGCTACGGGCCGCGAAGAACATCGGCCG 17559 Query 43382 GCGCGCGATCGGCGTCGAGCTCGACGAACGGTACTGCGAGATCGCCGCGACTCGGCTCTC 43441 |||||| || |||||||| ||||||| || ||||| | ||||| |||||| | Sbjct 17560 GCGCGCCATAGGCGTCGAAGTCGACGAGTCCTATTGCGAACTTATCGCGAAGCGGCTCGC 17619 Query 43442 GCA 43444 ||| Sbjct 17620 GCA 17622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161905468800204