Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_031281.1 Length=43516 Score E Sequences producing significant alignments: (Bits) Value seq372 116 1e-21 >seq372 Length=36520 Score = 116 bits (128), Expect = 1e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 3638 CGTGTTCGGCAACATCGACAGCTACGGCGATGTCGTGGTCAAGGGTGCGTTCGCCGACGA 3697 |||||||| |||| |||| ||| || ||||| |||| ||||| |||||||| | Sbjct 29733 CGTGTTCGACAACGTCGATTCCTATGGGGATGTGATGGTGAAGGGCGCGTTCGCTCGCTC 29792 Query 3698 CCTCGCCCGGTGGGAGAAGTCCGGCGATCCGATCCCGGTGCTGTTCGGGCACAACATGGC 3757 |||||| |||| | | | || |||||||||| |||| || ||||||||| | Sbjct 29793 GCTCGCCGATTGGGCGGCGAAAGACGCGCCGATCCCGGCCCTGTGGGGCCACAACATGTC 29852 Query 3758 CGACCCCGACTACAACATCGGCCACGTCGTCGACGCCAAAGAGGATGACCACGGCCT 3814 ||||| |||||||||||||| ||||| ||||||| || ||||| || ||||| || Sbjct 29853 TGACCCGGACTACAACATCGGTCACGTGCTCGACGCGAAGGAGGACGATCACGGGCT 29909 Score = 100 bits (110), Expect = 8e-17 Identities = 132/180 (73%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 3276 CGAGTTCAACCTGCGCGAGAAGCTGACCGGTTCGTTCGAGGAACGCGCCG-GGTCGATGC 3334 ||| || ||||| | ||| ||||| |||||| ||||| |||| |||| ||| | | Sbjct 28933 CGAATTTAACCTTCACGAAAAGCTTCGCGGTTCCTTCGAAGAACAAGCCGCGGTTTAC-C 28991 Query 3335 AAACCGCGATTGGCGGGCCGTGGATGACGGTCAACGAGGGCCGCGCACTGGACAATCGGC 3394 || ||| |||| || |||||||||||||| ||||| | || ||| || || || Sbjct 28992 AAGCCGGTGTTGGTGGTCCGTGGATGACGGTTAACGAAGCGCGTTCACGCGAAAACATGC 29051 Query 3395 CGCCCATCGAGGGCGGCGACGAGCTGATTCGGCCGTTGAACGTCACGCAGAACGGCGACC 3454 || | ||||| ||||||||||| ||||| || || |||||||| ||||||||||| Sbjct 29052 CGACTATCGAAGGCGGCGACGACCTGATCCGACCTTTGAACGT----GGGAACGGCGACC 29107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139122612998444