Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq85 178 2e-39 seq31 116 5e-21 >seq85 Length=11339561 Score = 178 bits (196), Expect = 2e-39 Identities = 229/316 (72%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 8270 AGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACT 8329 ||||| ||| |||| | ||||| | || ||||| ||| | || || | |||| Sbjct 6903631 AGCTCAGGATCTGGAATACTGAACGATGTGAAAGGACAACCCCTCACATTAGTGCAGATG 6903572 Query 8330 AGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTG 8389 |||||||| || | || | |||| |||| || || || ||||| || || || || Sbjct 6903571 AGAGACTGGATGGAAGCAGTGTTGATGATCTTAAAACCTACTTCTCCTCCAAAAGTACTC 6903512 Query 8390 GGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGA 8449 ||||||||||| ||||| |||||| || ||||||| ||||| | |||||||||| Sbjct 6903511 GGCTTCCAGTAGTGTGGGGAACAGATGGGATTACCCATGAGTCCTTTCAAGGAGAACGGA 6903452 Query 8450 GCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAG 8509 || |||| || | ||| ||||||||||||| |||| || || ||||||||||||| Sbjct 6903451 GCTCCCATTTCCACCATGGTCTCACCGAAGATAGCGTCTGGCCGAGGCTTTTCCACCAGC 6903392 Query 8510 AATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCG 8569 | ||| |||||||||||||| || | ||| ||||| ||||| | || ||||| Sbjct 6903391 AGGGCGGGATACAGCTCCACAGCATCAATGTCACCGTAGAGGGCTTCCAACTCTGCAGCC 6903332 Query 8570 ATCTCCTTTTCTCCTG 8585 || ||||| ||||||| Sbjct 6903331 ATTTCCTTCTCTCCTG 6903316 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 ||||||||||| |||| ||| ||| || ||||| || ||||| || || |||||||| Sbjct 6901995 GTCTGGAACAGACGCTCATCATCCCACTCCGGATGCTCCTGTTTAAGCACGTCGCACACT 6901936 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || || || || ||||| || Sbjct 6901935 CTGTTGTGTTCCCGCAGCCAGATGGTGGCATACATCATCAGACCGGGCACTAGGCCGAAG 6901876 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | |||| || || || | ||| || |||||||| || Sbjct 6901875 ACCTCCTGGCCCACGGCGAAGCGCAGGTGCTCAGGGGTGTGGGGTGGGTAGATCATCTGT 6901816 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||||| |||||||| | ||| || ||||| || || ||||| |||| Sbjct 6901815 ACCTGGGTATCTTTGACTGTGGGAGGGTACATCTCTCCATCAATTATCT 6901767 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | | || ||||| || | | | | Sbjct 6900252 TCACCTTTCACACCCATGGGAGTGGGGCAGTCATCCGCCACAGGAGGGAGGACTCGGGTG 6900193 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| || || ||||| |||||||||||| ||| | || |||| |||||| | Sbjct 6900192 TAGTAGGAAAGGTTAGAGAAGGCTTCCCAGCTTCTGTAGCCATAATCCGAGTTGTAAGTT 6900133 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || |||||||||||||||| ||||| |||| Sbjct 6900132 GGTGGGCTGTCAATCAAATGTGATCTGGCTGA 6900101 >seq31 Length=23434821 Score = 116 bits (128), Expect = 5e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| |||| || || || || ||||| |||||||||||| | || || Sbjct 12918139 TTGACAATATTGAAGCCCATCTCACCACCAAATGTGCTTGGCTTCCAGTACTCTGGAGAA 12918198 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| ||| ||| || |||||||| || |||||||| ||||||| || ||| Sbjct 12918199 CAGATGGGATTCCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCAAACTCGATCATACTC 12918258 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || ||||||||||| || || ||||| | | || || | ||| | ||| | Sbjct 12918259 TCCCCAAAGATGGCGTTTGGTAGGCATTTTTCAAGAAGCAACCCTGGGTAGAACTCTAAG 12918318 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||||| || ||| Sbjct 12918319 GCATCAATGTCTCCATATAACTCCTCCAACTCAGCTGCCATCTCCTTGTCCCCT 12918372 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Plus Query 9647 GTTCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCC 9704 || |||||||| || |||| | || |||||| | || || || |||| | |||| Sbjct 12927870 GTACTTACCCCGTGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTCT 12927927 Query 9705 TAAAAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGG 9764 | || |||||||| ||||| ||||| |||| ||||||||||| | ||| |||||||| | Sbjct 12927928 TGAAGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTTGTGCCCTGAG 12927987 Query 9765 GATCGGGAGTGAAGGTCCTCC 9785 |||| || |||| |||||| Sbjct 12927988 GATCAGGGATGAACTTCCTCC 12928008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716838904100160