Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq148 161 2e-34 seq40 140 8e-28 seq12 132 1e-25 seq22 122 2e-22 seq15 93.3 1e-13 seq18 87.8 4e-12 >seq148 Length=4887613 Score = 161 bits (178), Expect = 2e-34 Identities = 168/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| ||||||||||||| || || || || || || |||||||| || | Sbjct 4051008 AGGTCAAAATGC---AAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTAGAAG 4050952 Query 177970 TGGAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC 178029 ||||| | || ||||| ||||| || || ||||| ||||| |||||||| |||| Sbjct 4050951 TGGAACCCAGTGATACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCC 4050892 Query 178030 CTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG 178089 |||| |||||||| | || ||||| || || |||||||| |||||||| | |||||| Sbjct 4050891 CTCCTGACCAGCAGAGGCTCATCTTTGCAGGCAAACAGCTTGAAGATGGCCGCACTCTTT 4050832 Query 178090 CCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| ||||| || || ||||| || || Sbjct 4050831 CTGACTACAACATCCAGAAAGAGTCTACTCTGCACCTGGT 4050792 >seq40 Length=22651954 Score = 140 bits (154), Expect = 8e-28 Identities = 157/208 (75%), Gaps = 8/208 (4%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || ||||| || || ||||||||||||||||| || ||| Sbjct 7366705 CAGATCTTCGTGAAGACCCTGACAGGCAAGACCATCACCCTCGAGGTGGA--GCCCAGTG 7366648 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| |||||| || || || ||||| || || ||||| || ||||||| Sbjct 7366647 ACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 7366588 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || ||||| |||||||| || ||||| | ||||| | || || ||| Sbjct 7366587 AGCGTCTGATATTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCTGACTACAACA 7366528 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||| ||| || || ||||| || || Sbjct 7366527 TCC----AGAGTCTACCCTGCACCTAGT 7366504 >seq12 Length=34595640 Score = 132 bits (146), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||||| | || || || || || |||||||||||||||| |||||| | Sbjct 22518372 CAGATCTTCGTGAGGATCCTGACGGGCAAGACCATCACCCTCGAGGTGG--AGCTCAGTG 22518429 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||| |||| |||| | || || || ||||| || || ||||| || ||||||| Sbjct 22518430 ACACCATCAAGAATGTCAGAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 22518489 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || ||||| | |||||| || ||||| ||||| | || || |||| Sbjct 22518490 AGCGTCTGATATTTGCCGGCAGACAGCTGGAGGATGGCCAAACTCTCTCTGACTACAACG 22518549 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTT 178132 |||| ||||| || || ||||| || || || Sbjct 22518550 TCCAGAAAGAGTCTACCCTGCACCTAGTGTT 22518580 >seq22 Length=29172479 Score = 122 bits (134), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||| |||| || || || || || | |||||||||||||||| ||| || | Sbjct 11894568 CAGATCTTCCTGAAGACCCTGACGGGCAAGGCCATCACCCTCGAGGTGG--AGCCCAGTG 11894511 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||| | |||| |||||| || || || ||||| || || ||||| || ||||||| Sbjct 11894510 ACACCACCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAGC 11894451 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || || || |||| |||||||| || ||||| || |||| | || || ||| Sbjct 11894450 AGCGTCTGATATTTGCCGACAAACAGCTGGAGGATGGCAGACCTCTCTCTGACTACAACA 11894391 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 || | ||||| || || ||||| || || Sbjct 11894390 TCTAGAAAGAGTCCACCCTGCACCTGGT 11894363 >seq15 Length=34776858 Score = 93.3 bits (102), Expect = 1e-13 Identities = 145/206 (70%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||| |||| || || || || || | ||||||||||| || ||| | || Sbjct 23700489 CAAATCTTCATGAAGACCCTTACTGGCAACATCATCACCCTCGAAGTAGAACCCAGTGAA 23700430 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||| ||||| ||||| || ||||| || | ||||| || ||||||| Sbjct 23700429 ACCATTCAGAATGTCAAGGCCAAGATCCAAGACAAGGAGAGCATCCC-CCCAACCAGCAG 23700371 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| ||| | || ||||| ||||||||| | || || | || || | | || Sbjct 23700370 AGGCTGATCTTTGCCAGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTACAGCATC 23700311 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||| || || Sbjct 23700310 CAGAAGGAGTCCACCTTGCACCTGGT 23700285 >seq18 Length=28467743 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| |||||||| || ||||| || || || |||||||||||||||||| | ||| Sbjct 24039322 CAAATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAACCCAGTGAC 24039263 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGA 178021 ||||| ||||||||||| ||||| || ||||| || Sbjct 24039262 ACCATTGAGAACGTCAAGGCCAAGATCCAAGACAAGGA 24039225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203665976953426