Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Heterocephalus_20glaber_20[refseq_20GCF_5F000247695.1_202012-02-17] 4,229 sequences; 2,618,204,639 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq41 98.7 9e-16 seq148 96.9 3e-15 >seq41 Length=20498451 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||| ||||| ||| ||||||||| || || ||||| || ||||||| | || || Sbjct 848203 CACCAGGTGCAGGGTGGACTCCTTCTGGATATTGTAGTCAGACAGGGTGCATCCATCTTC 848262 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 |||||||||||||| || ||||| | ||||||||| | ||| | | ||||||||| Sbjct 848263 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCAGGGGGGATTCCCTCCTTGTC 848319 >seq148 Length=4887613 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | || || ||||| ||| ||||||||| || || ||||| Sbjct 4050314 ACAGCCACCCCTCAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATATTGTAGTC 4050373 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || |||||||| || || || || || | ||| ||||| | Sbjct 4050374 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCAGG 4050433 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || || || ||| ||| || ||||| | | || || || | ||| Sbjct 4050434 AGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTATCACTAGGCTC 4050493 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || ||||| ||||| || || |||||||| Sbjct 4050494 CACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 4050544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279561454800