Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq536 196 5e-45 seq260 134 1e-26 seq59 111 2e-19 seq64 102 8e-17 seq131 89.7 5e-13 >seq536 Length=337149 Score = 196 bits (216), Expect = 5e-45 Identities = 573/874 (66%), Gaps = 44/874 (5%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || |||||| | || || |||| || | || || || ||||||||||| || ||||| Sbjct 201780 ACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGT 201839 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATT-TTAGAGTACCCC 16780 || ||||||||||| || | ||| ||||| || |||||| || ||| || ||| Sbjct 201840 GAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAG---CCC 201896 Query 16781 AG-TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTT 16839 || ||| || || | ||||| || |||||||| || || || ||| || ||| || Sbjct 201897 AGCTTCAGC-ATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATT 201955 Query 16840 CATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC 16899 ||| || || || | || | ||||| || | || || ||||| | || Sbjct 201956 CATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGC 202015 Query 16900 TTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAA 16956 | | ||||| | | |||| | ||| || ||| | || || ||||| | Sbjct 202016 AT---TGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAG 202072 Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016 |||||| || || || || || ||||| ||||| |||||||| |||||||| || ||||| Sbjct 202073 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 202132 Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076 ||| | || |||||| |||||||||||| || ||||| Sbjct 202133 TGTGAGGCCAGGCATCAGTCCTCGTTTCTT----------------------GAGCCAGA 202170 Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136 |||||| || | || | | ||||| || | | ||||| | || || || ||||| Sbjct 202171 AAAGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTT 202230 Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196 || | |||| | | | |||| |||||| | ||| | ||| ||| ||||| | Sbjct 202231 GTCCCCAATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGT 202288 Query 17197 GGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| || || | | ||| |||| | || || || | ||||| || || || || || Sbjct 202289 GGCATTGAAGAGAAATTCCCTTTCTT-TGAAG-TCTTTAATATAAGTGTCAATAAGAAGA 202346 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 || |||||||| || |||||||| |||||||| || || || || || || | |||||| Sbjct 202347 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCT 202406 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | ||||||||||| | ||| | ||| | | ||| || || || |||| || Sbjct 202407 TCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCA 202466 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 | || || | || |||| || || | || ||||||| ||| || || | || | Sbjct 202467 CCTGCCGCAGAGAAAGCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCT 202525 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| || | || |||| | | |||| || || | |||||||| |||| | Sbjct 202526 TCCCAGTGCTGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCA 202584 Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATT 17528 || || ||| |||| | || ||| ||| || || Sbjct 202585 GCTTTCTTACACATCTGCCGGATACCATGGTGTT 202618 >seq260 Length=2306558 Score = 134 bits (148), Expect = 1e-26 Identities = 383/584 (66%), Gaps = 11/584 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || | || || |||| ||||| |||||||| |||||| Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || | |||| | | || |||||| ||| ||||||| ||| | ||||| | | Sbjct 2180326 TCACTGGAAACTT--AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || || || | ||||| | || || || | |||| || | | | ||| ||| Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | | ||| | | ||||||| ||||| || | Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGC 2180503 Query 17186 ATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTAT 17243 || ||||| ||||| || || | | ||| |||| | || | || | || || | Sbjct 2180504 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-TGAA-----ATCTTTTAAGTGT 2180557 Query 17244 CGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAA 17303 | || || || || |||||||| | |||| ||| | |||||| || || || | || | Sbjct 2180558 CAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATAGA 2180616 Query 17304 AGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCA 17363 | || | |||| | |||||||||||| | |||| ||| | | |||||| || | Sbjct 2180617 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 2180676 Query 17364 CGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCG 17423 | ||||| || || || || || || || ||||| || |||||| ||| || | Sbjct 2180677 CTATGCCATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAG 2180736 Query 17424 GTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAA 17483 | | || | | ||| | | || ||||| ||| |||| || | ||| ||| Sbjct 2180737 ATTTCAGGGCTTCCTAGTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAA 2180796 Query 17484 AACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTAT 17527 | | | | ||||| ||| | || | ||||||||||| |||| Sbjct 2180797 AGGAACCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTAT 2180840 >seq59 Length=10161055 Score = 111 bits (122), Expect = 2e-19 Identities = 398/616 (65%), Gaps = 15/616 (2%) Strand=Plus/Minus Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 |||| | ||| || ||||| ||| || | || ||||| | || || || || | Sbjct 9903015 ACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCAAATTCAGAG 9902957 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038 ||||| ||||||||||||||||||||||| || |||||||| | || |||||| | Sbjct 9902956 TGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT--- 9902900 Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098 | | | | ||||||||| | || || || ||||||||||| || | | | Sbjct 9902899 --TCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAGTG 9902842 Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158 || || | | | |||| ||| || || ||||||| | | |||| | | Sbjct 9902841 GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAAGGCA 9902782 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CT-TAAATAATTTCTCTT 17216 || || ||||| | ||| | ||| |||| |||| ||||| || | | || ||| || Sbjct 9902781 CAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTCCCTG 9902722 Query 17217 TTTCCTGTAGG--TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274 | | |||| | | || || | || || || || | || ||||| || ||||| Sbjct 9902721 TCT----TAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTAT 9902666 Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCAC 17334 ||| ||||| || | || || || | || || | |||||| |||||||| || Sbjct 9902665 GTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTTG 9902606 Query 17335 GTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAA 17394 | ||||| | | | |||||||| | | ||||| || | || | || || || | Sbjct 9902605 GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTAG 9902546 Query 17395 TATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTT 17454 | ||| || |||||| ||| || || | || | ||| || || || || Sbjct 9902545 AACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCTT 9902486 Query 17455 GGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514 ||| | |||||| || || | ||||| || ||| | || || |||||||| | ||| Sbjct 9902485 GGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCCA 9902426 Query 17515 AATATCATTGT-ATTG 17529 |||||||| || |||| Sbjct 9902425 AATATCATGGTGATTG 9902410 >seq64 Length=9676502 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || ||||| || | ||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 17106 C 17106 | Sbjct 6351427 C 6351427 >seq131 Length=5549739 Score = 89.7 bits (98), Expect = 5e-13 Identities = 249/378 (66%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109 ||| ||||| | | || || ||||||||||| || || || | | ||||| || | Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192 Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT 17169 | |||| ||| || || |||||||| | |||||| || |||| || ||||| Sbjct 3233191 AACATGTTCTT-GTAGGTAGCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133 Query 17170 TTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGG 17227 ||| | ||| |||| |||| || || || | | || ||| |||| || ||| Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTT---CTTTAGA 3233076 Query 17228 -TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || | || || || || || || || || ||||||| || || ||||| || |||| Sbjct 3233075 ATCTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGC 3233016 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 | ||| || || || || || | |||| | ||||||||||| | ||| ||| Sbjct 3233015 AACCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTC 3232956 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406 | | | |||||| || | ||||| || || || || || || |||| | | || || Sbjct 3232955 CACCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATAT 3232896 Query 17407 GAAATATTTTTCGTCCGG 17424 |||||| ||| || || Sbjct 3232895 AAAATATCGTTCCTCAGG 3232878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517464843478440