Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq536 196 5e-45
seq260 134 1e-26
seq59 111 2e-19
seq64 102 8e-17
seq131 89.7 5e-13
>seq536
Length=337149
Score = 196 bits (216), Expect = 5e-45
Identities = 573/874 (66%), Gaps = 44/874 (5%)
Strand=Plus/Plus
Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723
|| |||||| | || || |||| || | || || || ||||||||||| || |||||
Sbjct 201780 ACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGT 201839
Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATT-TTAGAGTACCCC 16780
|| ||||||||||| || | ||| ||||| || |||||| || ||| || |||
Sbjct 201840 GAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAG---CCC 201896
Query 16781 AG-TTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTT 16839
|| ||| || || | ||||| || |||||||| || || || ||| || ||| ||
Sbjct 201897 AGCTTCAGC-ATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATT 201955
Query 16840 CATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGC 16899
||| || || || | || | ||||| || | || || ||||| | ||
Sbjct 201956 CATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGC 202015
Query 16900 TTCCTTAATAATACTAGCA---ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAA 16956
| | ||||| | | |||| | ||| || ||| | || || ||||| |
Sbjct 202016 AT---TGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAG 202072
Query 16957 CATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAA 17016
|||||| || || || || || ||||| ||||| |||||||| |||||||| || |||||
Sbjct 202073 CATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAA 202132
Query 17017 TGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGA 17076
||| | || |||||| |||||||||||| || |||||
Sbjct 202133 TGTGAGGCCAGGCATCAGTCCTCGTTTCTT----------------------GAGCCAGA 202170
Query 17077 AAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTT 17136
|||||| || | || | | ||||| || | | ||||| | || || || |||||
Sbjct 202171 AAAGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTT 202230
Query 17137 GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTAT 17196
|| | |||| | | | |||| |||||| | ||| | ||| ||| ||||| |
Sbjct 202231 GTCCCCAATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGT 202288
Query 17197 GGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254
||| || || | | ||| |||| | || || || | ||||| || || || || ||
Sbjct 202289 GGCATTGAAGAGAAATTCCCTTTCTT-TGAAG-TCTTTAATATAAGTGTCAATAAGAAGA 202346
Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314
|| |||||||| || |||||||| |||||||| || || || || || || | ||||||
Sbjct 202347 CTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCT 202406
Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374
|| | ||||||||||| | ||| | ||| | | ||| || || || |||| ||
Sbjct 202407 TCTGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCA 202466
Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434
| || || | || |||| || || | || ||||||| ||| || || | || |
Sbjct 202467 CCTGCCGCAGAGAAAGCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCT 202525
Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494
||||| || | || |||| | | |||| || || | |||||||| |||| |
Sbjct 202526 TCCCAGTGCTGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCA 202584
Query 17495 GCCTTTTTATACATATTCCAAATATCATTGTATT 17528
|| || ||| |||| | || ||| ||| || ||
Sbjct 202585 GCTTTCTTACACATCTGCCGGATACCATGGTGTT 202618
>seq260
Length=2306558
Score = 134 bits (148), Expect = 1e-26
Identities = 383/584 (66%), Gaps = 11/584 (2%)
Strand=Plus/Plus
Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005
|| ||||| |||||||| || || | || || |||| ||||| |||||||| ||||||
Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325
Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065
|| | |||| | | || |||||| ||| ||||||| ||| | ||||| | |
Sbjct 2180326 TCACTGGAAACTT--AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383
Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125
|| || || | ||||| | || || || | |||| || | | | ||| |||
Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443
Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185
|| || ||||||| | |||||| | | ||| | | ||||||| ||||| || |
Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGC 2180503
Query 17186 ATCGTTTCTATGGCCTTAAATA--ATTTCTCTTTTTCCTGTAGGTCGATTATATACGTAT 17243
|| ||||| ||||| || || | | ||| |||| | || | || | || || |
Sbjct 2180504 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-TGAA-----ATCTTTTAAGTGT 2180557
Query 17244 CGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAA 17303
| || || || || |||||||| | |||| ||| | |||||| || || || | || |
Sbjct 2180558 CAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATAGA 2180616
Query 17304 AGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCA 17363
| || | |||| | |||||||||||| | |||| ||| | | |||||| || |
Sbjct 2180617 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 2180676
Query 17364 CGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCG 17423
| ||||| || || || || || || || ||||| || |||||| ||| || |
Sbjct 2180677 CTATGCCATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAG 2180736
Query 17424 GTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAA 17483
| | || | | ||| | | || ||||| ||| |||| || | ||| |||
Sbjct 2180737 ATTTCAGGGCTTCCTAGTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAA 2180796
Query 17484 AACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTAT 17527
| | | | ||||| ||| | || | ||||||||||| ||||
Sbjct 2180797 AGGAACCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTAT 2180840
>seq59
Length=10161055
Score = 111 bits (122), Expect = 2e-19
Identities = 398/616 (65%), Gaps = 15/616 (2%)
Strand=Plus/Minus
Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978
|||| | ||| || ||||| ||| || | || ||||| | || || || || |
Sbjct 9903015 ACTCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGACATCGGGCA-GCAAATTCAGAG 9902957
Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038
||||| ||||||||||||||||||||||| || |||||||| | || |||||| |
Sbjct 9902956 TGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT--- 9902900
Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098
| | | | ||||||||| | || || || ||||||||||| || | | |
Sbjct 9902899 --TCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAGTG 9902842
Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158
|| || | | | |||| ||| || || ||||||| | | |||| | |
Sbjct 9902841 GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAAGGCA 9902782
Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC-CT-TAAATAATTTCTCTT 17216
|| || ||||| | ||| | ||| |||| |||| ||||| || | | || ||| ||
Sbjct 9902781 CAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTCCCTG 9902722
Query 17217 TTTCCTGTAGG--TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTAT 17274
| | |||| | | || || | || || || || | || ||||| || |||||
Sbjct 9902721 TCT----TAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTAT 9902666
Query 17275 GTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCAC 17334
||| ||||| || | || || || | || || | |||||| |||||||| ||
Sbjct 9902665 GTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTTG 9902606
Query 17335 GTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAA 17394
| ||||| | | | |||||||| | | ||||| || | || | || || || |
Sbjct 9902605 GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTAG 9902546
Query 17395 TATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTT 17454
| ||| || |||||| ||| || || | || | ||| || || || ||
Sbjct 9902545 AACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCTT 9902486
Query 17455 GGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCA 17514
||| | |||||| || || | ||||| || ||| | || || |||||||| | |||
Sbjct 9902485 GGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCCA 9902426
Query 17515 AATATCATTGT-ATTG 17529
|||||||| || ||||
Sbjct 9902425 AATATCATGGTGATTG 9902410
>seq64
Length=9676502
Score = 102 bits (112), Expect = 8e-17
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045
|||| |||||||| |||||||| || |||||||| | || |||||| |||||||||||
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105
| | ||| ||||| | || || || ||||||||||| || ||||| || | ||||| |
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 17106 C 17106
|
Sbjct 6351427 C 6351427
>seq131
Length=5549739
Score = 89.7 bits (98), Expect = 5e-13
Identities = 249/378 (66%), Gaps = 7/378 (2%)
Strand=Plus/Minus
Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109
||| ||||| | | || || ||||||||||| || || || | | ||||| || |
Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192
Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTT 17169
| |||| ||| || || |||||||| | |||||| || |||| || |||||
Sbjct 3233191 AACATGTTCTT-GTAGGTAGCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133
Query 17170 TTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAGG 17227
||| | ||| |||| |||| || || || | | || ||| |||| || |||
Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTT---CTTTAGA 3233076
Query 17228 -TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286
|| | || || || || || || || || ||||||| || || ||||| || ||||
Sbjct 3233075 ATCTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGC 3233016
Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346
| ||| || || || || || | |||| | ||||||||||| | ||| |||
Sbjct 3233015 AACCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTC 3232956
Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406
| | | |||||| || | ||||| || || || || || || |||| | | || ||
Sbjct 3232955 CACCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATAT 3232896
Query 17407 GAAATATTTTTCGTCCGG 17424
|||||| ||| || ||
Sbjct 3232895 AAAATATCGTTCCTCAGG 3232878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517464843478440
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