Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq536 208 8e-49
seq299 165 8e-36
seq260 165 8e-36
seq59 113 5e-20
seq64 107 2e-18
seq2 102 8e-17
>seq536
Length=337149
Score = 208 bits (230), Expect = 8e-49
Identities = 584/888 (66%), Gaps = 40/888 (5%)
Strand=Plus/Plus
Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961
|| |||||| | || || || | || | || || |||||||||||||| || ||||
Sbjct 201780 ACTCCCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGT 201839
Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAGTAGCT--GAAAATATC-TTAGAGTACCCC 16018
|| ||||| |||||||| | ||| ||||| || |||||| | ||| || |||
Sbjct 201840 GAAATATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAG---CCC 201896
Query 16019 AG-TTCCGTAACTAATC-TATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAAT 16076
|| ||| | | ||| | ||||||| |||||||| || || || ||| || |||||
Sbjct 201897 AGCTTCAGCA--TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAAT 201954
Query 16077 TAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCG 16136
| || || || || | || | |||| ||| | || | || |||||| | |
Sbjct 201955 TCATCCCAATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGG 202014
Query 16137 CTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACA 16196
| | |||| | || | ||| || || ||| | || |||||||| | ||
Sbjct 202015 CATTGATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCA 202074
Query 16197 TTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAG 16256
| || || || ||||| || |||| || || |||||||| |||||||| |||||||| |
Sbjct 202075 TCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATG 202134
Query 16257 TTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAA 16316
| | || ||||| ||||||||||| ||| || ||||
Sbjct 202135 TGAGGCCAGGCATCAGTCCTCGTTTCT----------------------TGAGCCAGAAA 202172
Query 16317 AGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTAT 16376
|||| || | || | || ||||| || | | ||||| | || ||||| ||||| |
Sbjct 202173 AGAAGATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGT 202232
Query 16377 TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGG 16436
| |||| | | | ||||| |||||| | || | |||| ||| ||||| |||
Sbjct 202233 CCCCAATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGG 202290
Query 16437 CCTT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494
| || | | || ||| |||| | |||| || | ||||| || ||||| || | |||
Sbjct 202291 CATTGAAGAGAAATTCCCTTTCT-TTGAA-GTCTTTAATATAAGTGTCAATAAGAAGACT 202348
Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554
|||||||| || |||||||| || ||||| || || || |||||||| | || || ||
Sbjct 202349 ATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTC 202408
Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614
| ||||| ||||| | |||| | ||| ||| ||||| || || || | ||||
Sbjct 202409 TGTAATTTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACC 202468
Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATG 16674
||| ||| | || |||| ||||| | || ||||||| ||| |||| | || |
Sbjct 202469 TGCCGCAGAGAAAGCCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTC 202527
Query 16675 CCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGC 16734
||| | | | || |||| | | |||| || || | ||||||||| |||| | ||
Sbjct 202528 CCAGTGCTGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGC 202586
Query 16735 CTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782
|| ||| |||| | || ||| ||| || || || ||||| | |||
Sbjct 202587 TTTCTTACACATCTGCCGGATACCATGGTGTTCCATAGGAAAGATGAC 202634
>seq299
Length=1791600
Score = 165 bits (182), Expect = 8e-36
Identities = 284/407 (70%), Gaps = 4/407 (1%)
Strand=Plus/Minus
Query 15931 TTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGA-T 15989
||| || ||||| || ||||| || |||||||| || ||||||||||||||||||||| |
Sbjct 1083411 TTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAATCAAAGGGATT 1083352
Query 15990 TAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049
| | ||||||| | ||| ||| | || |||||| ||| |||||| || |||| |||||
Sbjct 1083351 TTCTGCCTGAAAA-ACCTTTGAGAATCCAAGTTCCATAAGTAATCTTTCAGCTATAAATT 1083293
Query 16050 CTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTG 16109
| ||||| || | ||| || | || || || | || || | || || | ||| ||
Sbjct 1083292 CAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCAACTGGCAAGTCTTCTG 1083233
Query 16110 TTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGT-TTCA 16168
||||||| | || || || || || | |||||| || | | | | | |||
Sbjct 1083232 TTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCCCTCACCCTTTTCTTCT 1083173
Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228
|| | ||| || || | ||||| ||| || || ||||| | | ||| ||||
Sbjct 1083172 GAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAAGTCATAGAGAAGTTCTTCA 1083113
Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288
|||||| |||| || || |||||||| || | || || || |||| |||||||||
Sbjct 1083112 TCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGATGGGACCTCTCTTCTTTAAC 1083053
Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGA 16335
||||| || | |||||| || || | ||||| || || || |||||
Sbjct 1083052 CAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTCCACAGA 1083007
Score = 82.4 bits (90), Expect = 8e-11
Identities = 208/308 (68%), Gaps = 9/308 (3%)
Strand=Plus/Minus
Query 16237 GATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATAT 16296
|||||| || |||||||| || | || || || |||| |||||||||||||| ||
Sbjct 1082837 GATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAAT 1082778
Query 16297 CGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTC 16356
|||||||| || || || ||||| || || || ||||| | || | | || |||
Sbjct 1082777 AGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTC 1082718
Query 16357 CGCGTACGTAGCATCTTTAT-TACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTA 16415
| | | |||| | | ||| ||| |||||| | | |||| || ||||||| | |||
Sbjct 1082717 CCCAAAAGTAGACTTTCTATCTAC-TATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTA 1082659
Query 16416 TACAAT-CCATCGTTTCTATGGCCTTAA--ACAATTTCTCTTTTTCCTGAATATCGATTA 16472
|| ||| |||| || || |||| | || ||| | |||| || | ||| | |
Sbjct 1082658 ACGTATGGCATTGTTTTAATTGCATTAAATAAAAATTC-CCCTTTCTTGGA-ATCTCTGA 1082601
Query 16473 TATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAA 16532
| | ||||| || || |||| || || | |||||| | |||| |||| || ||||
Sbjct 1082600 TTCAAGTATCTATTAGCAAAC--TATATCTTTGAGTGAACATTCTTTATGAGAATTTGAA 1082543
Query 16533 ATCCATAG 16540
| ||| ||
Sbjct 1082542 AACCACAG 1082535
>seq260
Length=2306558
Score = 165 bits (182), Expect = 8e-36
Identities = 400/601 (67%), Gaps = 11/601 (2%)
Strand=Plus/Plus
Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243
|||||||| ||||| || || || |||| || ||| || || |||||||| ||||||
Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325
Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303
|| |||||| ||| || ||||| ||| ||||||| ||| ||||||| | ||
Sbjct 2180326 TCACTGGAAAC--TTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383
Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363
|| || | | ||||| | || || |||| |||| || | | | ||| |||
Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443
Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423
||||| ||||| | | |||||| | | ||| | | ||||||| |||| | || |
Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGC 2180503
Query 16424 ATCGTTTCTATGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481
|| ||||| ||||| || || | | ||| |||| | |||| || | || || |
Sbjct 2180504 ATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTT-TGAA-----ATCTTTTAAGTGT 2180557
Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541
|||| || | ||| |||||||| | |||| || || ||||| || || || ||||||
Sbjct 2180558 CAATAAGGAGACTATACATTTCACAATGTAGTTTTTC-ATGGCAATTTGGAAGTCATAGA 2180616
Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601
| || || | || | ||||| |||||| | |||| ||| ||| || ||||| |
Sbjct 2180617 AACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTA 2180676
Query 16602 CGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAG 16661
| || || |||||||| ||||| || || || || || |||||| ||| ||||
Sbjct 2180677 CTATGCCATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAG 2180736
Query 16662 ATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAA 16721
|| | || | | | | | || ||||| ||| |||| || | ||| |||
Sbjct 2180737 ATTTCAGGGCTTCCTAGTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAA 2180796
Query 16722 AGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGA 16781
|| | | | ||||| ||| | || | ||||||||||| |||| || ||||| | ||
Sbjct 2180797 AGGAACCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGA 2180856
Query 16782 C 16782
|
Sbjct 2180857 C 2180857
>seq59
Length=10161055
Score = 113 bits (124), Expect = 5e-20
Identities = 363/558 (65%), Gaps = 18/558 (3%)
Strand=Plus/Minus
Query 16217 TGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCT 16276
|||| || |||||||||||||||||||| |||||||| || | || |||||
Sbjct 9902956 TGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCAT------- 9902904
Query 16277 CGTTTCTTT--AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAG 16334
| ||||| | ||| ||||| | |||||||| || |||||||| || | | ||
Sbjct 9902903 CAGTTCTTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844
Query 16335 ATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTA 16394
|| || | | | |||| ||| ||||| ||||| | | | |||| |
Sbjct 9902843 TGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAAGG 9902784
Query 16395 CCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTC 16452
| || || ||||| | || | ||| |||| |||| ||||| | | | || ||| |
Sbjct 9902783 CACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTCCC 9902724
Query 16453 TTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTAT 16512
| | | |||| | | | || | || |||| || | || || ||||| || |||||
Sbjct 9902723 TGTCTTAGGAATTTTTAATGTAAATGT--CAATAAGGAGACCATATATTTCAGAATGTAT 9902666
Query 16513 GTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCAC 16572
||| || || || | || || ||| |||| || | || || ||||| || ||
Sbjct 9902665 GTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTTG 9902606
Query 16573 GTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA- 16631
| |||||| | | |||| || ||| | | || || |||| ||| |||| || || |
Sbjct 9902605 GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTAG 9902546
Query 16632 -ATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCT 16690
| ||||| | || |||||| ||| |||| | || |||| | | ||
Sbjct 9902545 AACATGTGAT--ATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCC 9902488
Query 16691 TTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTC 16750
||||| | |||||| || || | ||||| ||| ||| | || || |||||||||| |
Sbjct 9902487 TTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGC 9902428
Query 16751 CAAATATCATTGT-ATTG 16767
|||||||||| || ||||
Sbjct 9902427 CAAATATCATGGTGATTG 9902410
>seq64
Length=9676502
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | |||||| || || |||||||| || ||||| |||| ||||| ||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGC 6351427
>seq2
Length=46620681
Score = 102 bits (112), Expect = 8e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| ||||| |||||||| || | ||| ||||| |||| ||||
Sbjct 41377777 CTTCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCT 41377718
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 41377717 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGG 41377658
Query 16344 CGATTAATCGTTCC 16357
| | | || ||||
Sbjct 41377657 CCACCACTCTTTCC 41377644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511334600175560
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