Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq394 165 7e-36 seq82 91.5 1e-13 >seq394 Length=841001 Score = 165 bits (182), Expect = 7e-36 Identities = 378/560 (68%), Gaps = 7/560 (1%) Strand=Plus/Minus Query 18790 GGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACT 18849 ||||||||| ||| |||| ||||||||||||||||||||| | || || | |||| | Sbjct 665745 GGGACCTTGTCCCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAG-GT 665687 Query 18850 GT-CAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 || | ||| | |||| | |||||| | || || ||||||| || || | || || Sbjct 665686 GTGGATTCAGATTATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATC 665627 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAA-TCCAAAGGATATCCC 18967 ||||| ||||| ||| | || |||| || || | |||||| |||||| ||| | || Sbjct 665626 AAAACCAACCCTGAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCC 665567 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027 | ||| | || |||||||| || | || ||||| ||| | || || || | Sbjct 665566 TCTGATGCTGCTGCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAATGG-GAGCT 665508 Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||||| | ||||| || || || | |||||| | || |||| |||| ||||| Sbjct 665507 GTCCTGCTGGATGTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGA 665448 Query 19088 TGGATATGCACTTCTTACC-TACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGAT 19145 | ||||| || |||||| ||||| || ||||| | | |||| | | || || || Sbjct 665447 CAGCTATGCCCTGCTTACCTTACATGGTTGCGCACATCA-GGGACCTGCAGCCAGGGGAC 665389 Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205 || || ||| | |||| ||||||| |||||| ||||||| || || || | ||| | Sbjct 665388 TTTATGCATTCTTTGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATT 665329 Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265 ||||| || ||| | |||| || | ||||| ||| ||| || | Sbjct 665328 CAGCTTCTATGAGAAGCAAGAGCTTTCCCAAAGTTCAAAATCCTTCCAAAGGTTGAGAAA 665269 Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325 || || |||| ||| || | |||||| |||| || || |||||||| | | | Sbjct 665268 ATTGACAACTTCAAAGTTAACAACTTTCAGATTGAAGGGTAAAATCCACATCTAATCATT 665209 Query 19326 AAAATGGAAATGGCTCTTTA 19345 |||||| | |||||| |||| Sbjct 665208 AAAATGCAGATGGCTGTTTA 665189 >seq82 Length=8104705 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| ||| |||||||| || | | || ||||| ||||| | || || || | ||| Sbjct 34662 ATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGTCC 34603 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 ||||| | |||||||| || || || |||||||| || || || |||||||| || | Sbjct 34602 TGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAGC 34543 Query 19092 TATGCACTTCTTACCTACAT 19111 ||| | || ||||||||||| Sbjct 34542 TATTCCCTGCTTACCTACAT 34523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399443220834735