Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001348.1
Length=124884
Score E
Sequences producing significant alignments: (Bits) Value
seq394 165 7e-36
seq82 91.5 1e-13
>seq394
Length=841001
Score = 165 bits (182), Expect = 7e-36
Identities = 378/560 (68%), Gaps = 7/560 (1%)
Strand=Plus/Minus
Query 18790 GGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACT 18849
||||||||| ||| |||| ||||||||||||||||||||| | || || | |||| |
Sbjct 665745 GGGACCTTGTCCCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAG-GT 665687
Query 18850 GT-CAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908
|| | ||| | |||| | |||||| | || || ||||||| || || | || ||
Sbjct 665686 GTGGATTCAGATTATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATC 665627
Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAA-TCCAAAGGATATCCC 18967
||||| ||||| ||| | || |||| || || | |||||| |||||| ||| | ||
Sbjct 665626 AAAACCAACCCTGAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCC 665567
Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATT 19027
| ||| | || |||||||| || | || ||||| ||| | || || || |
Sbjct 665566 TCTGATGCTGCTGCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAATGG-GAGCT 665508
Query 19028 ATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087
|||||| | ||||| || || || | |||||| | || |||| |||| |||||
Sbjct 665507 GTCCTGCTGGATGTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGA 665448
Query 19088 TGGATATGCACTTCTTACC-TACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGAT 19145
| ||||| || |||||| ||||| || ||||| | | |||| | | || || ||
Sbjct 665447 CAGCTATGCCCTGCTTACCTTACATGGTTGCGCACATCA-GGGACCTGCAGCCAGGGGAC 665389
Query 19146 TTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTG 19205
|| || ||| | |||| ||||||| |||||| ||||||| || || || | ||| |
Sbjct 665388 TTTATGCATTCTTTGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATT 665329
Query 19206 CAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGAT 19265
||||| || ||| | |||| || | ||||| ||| ||| || |
Sbjct 665328 CAGCTTCTATGAGAAGCAAGAGCTTTCCCAAAGTTCAAAATCCTTCCAAAGGTTGAGAAA 665269
Query 19266 ATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTA 19325
|| || |||| ||| || | |||||| |||| || || |||||||| | | |
Sbjct 665268 ATTGACAACTTCAAAGTTAACAACTTTCAGATTGAAGGGTAAAATCCACATCTAATCATT 665209
Query 19326 AAAATGGAAATGGCTCTTTA 19345
|||||| | |||||| ||||
Sbjct 665208 AAAATGCAGATGGCTGTTTA 665189
>seq82
Length=8104705
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031
|||| ||| |||||||| || | | || ||||| ||||| | || || || | |||
Sbjct 34662 ATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAATGGGGAGCTGTCC 34603
Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091
||||| | |||||||| || || || |||||||| || || || |||||||| || |
Sbjct 34602 TGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTTCAACATCGCCAGC 34543
Query 19092 TATGCACTTCTTACCTACAT 19111
||| | || |||||||||||
Sbjct 34542 TATTCCCTGCTTACCTACAT 34523
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399443220834735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |