Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq8 196 3e-45 seq1 127 1e-24 seq1050 111 1e-19 >seq8 Length=25962938 Score = 196 bits (216), Expect = 3e-45 Identities = 174/218 (80%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014 ||||| || ||||| |||||||| |||| ||| | |||||||||||||| || ||||| Sbjct 8621879 ATGGGGGTGACGCAGGTGCAGCCCACAGCCACCACCATCTTCTCTAGCCGGAAGGAATTT 8621938 Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074 |||||| | ||| || | | |||| || || |||||||| ||||| ||||| |||||| Sbjct 8621939 GGGCAGTGCTGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGACGGAGTTC 8621998 Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134 ||||||| ||| || ||||| |||||||||| ||| || | || ||| |||||||| ||| Sbjct 8621999 ATGTGGTGGTCCACCTTCCCTTCAGCATTAATACAGCCCAGGTGGCGGCACTTTGCCTCC 8622058 Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||||||| ||| ||||| || | || |||||||| Sbjct 8622059 CAGATCACAGCGGGGTATCTCTCAGGGTCCTCATTGCG 8622096 >seq1 Length=58279134 Score = 127 bits (140), Expect = 1e-24 Identities = 114/142 (80%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 |||||||| || | | ||||| |||||||| ||||| | |||||| | |||||||| || Sbjct 74275 GATAACTC-TACTTACCTTATAAACAGAACTGCCTCCTACTATCCAAATCATGTCTATTT 74333 Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267 || |||||||||||||||| || ||||||||||| ||||| | ||| || || | || Sbjct 74334 TACTTGCTAATTCTGGCTGCTCAGTAAGTTTTAAGGCATCGGTCAGACTTTTGGCAAGAA 74393 Query 4268 AATGAGCTCTATGTGGAAGCTC 4289 ||||||||| |||||||| || Sbjct 74394 AATGAGCTCCTTGTGGAAGTTC 74415 Score = 118 bits (130), Expect = 8e-22 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || ||||| ||||| Sbjct 80973 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGG 81032 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| ||||||||||||| | |||||||||| ||| Sbjct 81033 AATAGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTG 81082 Score = 116 bits (128), Expect = 3e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| | ||||| |||||| ||||| ||||||| |||||| || ||||| Sbjct 71054 AAGTTTATATTTCTTCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 71113 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175 |||||| |||||||||||||||| || || ||| | | |||| ||||| || | ||| | Sbjct 71114 GATCCTTGTCACAAACAGTTTAATATGGCCTGGTTGAATCATGGCTTCCTTTGAAACAAA 71173 Query 4176 AC 4177 || Sbjct 71174 AC 71175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| | |||| |||||||||||||||||||||||||| | |||||| || || || | Sbjct 63922 ATTAATCAGTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACCT 63981 Query 4028 TAGAAAGAACACTTGGATAT 4047 ||||||||||| ||| ||| Sbjct 63982 CAGAAAGAACACCTGGGTAT 64001 >seq1050 Length=57131 Score = 111 bits (122), Expect = 1e-19 Identities = 99/123 (80%), Gaps = 1/123 (1%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGG-AAAAAAGGTGTCACATTCAAAGTCTTGCA 4114 |||||| |||||||| | ||||| |||||| |||||| ||||||| |||||| || |||| Sbjct 32545 AAGTTTATATTTCTCCAAATCAATTTCTGGGAAAAAATGTGTCACTTTCAAATTCCTGCA 32604 Query 4115 TGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAG 4174 ||||||| |||||||||| ||||| || || ||| | | ||| ||||| || | ||| Sbjct 32605 TGATCCTTGTCACAAACAATTTAATATGGCCTGGTTGAATCACGGCTTCCTTTGAAACAA 32664 Query 4175 AAC 4177 ||| Sbjct 32665 AAC 32667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361196240484233