Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq8 196 3e-45
seq1 127 1e-24
seq1050 111 1e-19
>seq8
Length=25962938
Score = 196 bits (216), Expect = 3e-45
Identities = 174/218 (80%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 26955 ATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTA 27014
||||| || ||||| |||||||| |||| ||| | |||||||||||||| || |||||
Sbjct 8621879 ATGGGGGTGACGCAGGTGCAGCCCACAGCCACCACCATCTTCTCTAGCCGGAAGGAATTT 8621938
Query 27015 GGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTC 27074
|||||| | ||| || | | |||| || || |||||||| ||||| ||||| ||||||
Sbjct 8621939 GGGCAGTGCTGAGGCTCCCTTCGCAGGACCAGGATCTCTTGCTGGATGGGGACGGAGTTC 8621998
Query 27075 ATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCC 27134
||||||| ||| || ||||| |||||||||| ||| || | || ||| |||||||| |||
Sbjct 8621999 ATGTGGTGGTCCACCTTCCCTTCAGCATTAATACAGCCCAGGTGGCGGCACTTTGCCTCC 8622058
Query 27135 CAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172
|| ||||||| ||| ||||| || | || ||||||||
Sbjct 8622059 CAGATCACAGCGGGGTATCTCTCAGGGTCCTCATTGCG 8622096
>seq1
Length=58279134
Score = 127 bits (140), Expect = 1e-24
Identities = 114/142 (80%), Gaps = 1/142 (1%)
Strand=Plus/Plus
Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207
|||||||| || | | ||||| |||||||| ||||| | |||||| | |||||||| ||
Sbjct 74275 GATAACTC-TACTTACCTTATAAACAGAACTGCCTCCTACTATCCAAATCATGTCTATTT 74333
Query 4208 TATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAA 4267
|| |||||||||||||||| || ||||||||||| ||||| | ||| || || | ||
Sbjct 74334 TACTTGCTAATTCTGGCTGCTCAGTAAGTTTTAAGGCATCGGTCAGACTTTTGGCAAGAA 74393
Query 4268 AATGAGCTCTATGTGGAAGCTC 4289
||||||||| |||||||| ||
Sbjct 74394 AATGAGCTCCTTGTGGAAGTTC 74415
Score = 118 bits (130), Expect = 8e-22
Identities = 92/110 (84%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| ||||| | |||||||| | |||||||||| | |||||||| || ||||| |||||
Sbjct 80973 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTTTCAGG 81032
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399
||| |||||||| ||||| ||||||||||||| | |||||||||| |||
Sbjct 81033 AATAGAGAACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTG 81082
Score = 116 bits (128), Expect = 3e-21
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
|||||| ||||||| | ||||| |||||| ||||| ||||||| |||||| || |||||
Sbjct 71054 AAGTTTATATTTCTTCAAATCAATTTCTGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 71113
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGA 4175
|||||| |||||||||||||||| || || ||| | | |||| ||||| || | ||| |
Sbjct 71114 GATCCTTGTCACAAACAGTTTAATATGGCCTGGTTGAATCATGGCTTCCTTTGAAACAAA 71173
Query 4176 AC 4177
||
Sbjct 71174 AC 71175
Score = 91.5 bits (100), Expect = 1e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027
|||||| | |||| |||||||||||||||||||||||||| | |||||| || || || |
Sbjct 63922 ATTAATCAGTCTTTTCATATACTTCAAATTTGTACTTAATGCCTTTCTCCTCCTGGACCT 63981
Query 4028 TAGAAAGAACACTTGGATAT 4047
||||||||||| ||| |||
Sbjct 63982 CAGAAAGAACACCTGGGTAT 64001
>seq1050
Length=57131
Score = 111 bits (122), Expect = 1e-19
Identities = 99/123 (80%), Gaps = 1/123 (1%)
Strand=Plus/Plus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGG-AAAAAAGGTGTCACATTCAAAGTCTTGCA 4114
|||||| |||||||| | ||||| |||||| |||||| ||||||| |||||| || ||||
Sbjct 32545 AAGTTTATATTTCTCCAAATCAATTTCTGGGAAAAAATGTGTCACTTTCAAATTCCTGCA 32604
Query 4115 TGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAG 4174
||||||| |||||||||| ||||| || || ||| | | ||| ||||| || | |||
Sbjct 32605 TGATCCTTGTCACAAACAATTTAATATGGCCTGGTTGAATCACGGCTTCCTTTGAAACAA 32664
Query 4175 AAC 4177
|||
Sbjct 32665 AAC 32667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 361196240484233
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |