Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq536 288 1e-72 seq59 183 4e-41 seq131 178 2e-39 seq260 174 2e-38 seq58 145 9e-30 seq30 122 1e-22 seq3 120 4e-22 seq64 114 2e-20 seq2 107 2e-18 seq299 98.7 1e-15 >seq536 Length=337149 Score = 288 bits (318), Expect = 1e-72 Identities = 632/944 (67%), Gaps = 40/944 (4%) Strand=Plus/Plus Query 23782 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 23838 |||| ||||||||||| |||| || | |||| ||| ||| | || ||||| |||| Sbjct 201724 TGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 201783 Query 23839 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 23898 ||||||| || || || || || | || || || || |||||||| ||||||| ||| | Sbjct 201784 CCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAA 201843 Query 23899 TATTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAA-TTCA 23957 |||| ||||| || | ||||||| || || | || | ||||| |||| |||| Sbjct 201844 TATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCA 201903 Query 23958 GAAATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCT 24017 | | | | |||||||| ||||| || || || ||||||| |||||||| || Sbjct 201904 GCA-TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCA 201962 Query 24018 ATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTT 24077 || || || | || | || | || || || || || || || || || | | Sbjct 201963 ATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCAT---TG 202019 Query 24078 ATAATAGATC---TTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAA 24134 ||||| | | ||||| | | || ||| | | | ||||| | ||||| Sbjct 202020 ATAATTGTTTCTTTTACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGG 202079 Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || || ||||||| |||||| ||||| ||||| | ||| |||||||| ||||| Sbjct 202080 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGG 202139 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 || ||||| || || || || || ||||| |||||||| Sbjct 202140 CCAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAG 202177 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 |||| || | || |||||||| | || | ||||||||| | | | |||| Sbjct 202178 ATTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCA 202237 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||| | | ||||| ||| ||||| || |||||||||||||| || | ||||| Sbjct 202238 ATCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTG 202295 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 |||||| | | |||| || ||||||| ||| || ||||| | ||||||||||||| Sbjct 202296 AAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATT 202355 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 || ||||| |||||||| ||||| ||||| || || ||||||| | || || ||||| Sbjct 202356 TCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATT 202415 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || |||||| | |||| | || | ||||| || || ||||| | |||| || ||| Sbjct 202416 TGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCA 202475 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 24611 | || |||| | || ||||||||||| ||| || || | || | ||| | Sbjct 202476 GAGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGC 202534 Query 24612 TTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTA 24671 | || || | || | | |||| || || |||||||||| || ||||| || || ||| Sbjct 202535 TGAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTA 202593 Query 24672 TACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| | || ||| |||| | || || ||||| || || || Sbjct 202594 CACATCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637 >seq59 Length=10161055 Score = 183 bits (202), Expect = 4e-41 Identities = 377/557 (68%), Gaps = 13/557 (2%) Strand=Plus/Minus Query 24148 AGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 24207 |||||| |||||||||||| || || | ||| |||||||| ||||| || ||||| || Sbjct 9902958 AGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTT 9902899 Query 24208 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC--TAC 24265 | || | ||||||||||| || |||||||| ||||||||||| ||| || | || Sbjct 9902898 C-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATTTCTCCCGTAG 9902844 Query 24266 TGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTG 24322 || || ||| | | || | || || || | | | |||| |||| Sbjct 9902843 TG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTCCAACACAA 9902786 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 || || || || ||||| || || |||||||| | || || ||| | ||||| | | Sbjct 9902785 GGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAGAGAAATTC 9902726 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 | || | || ||||| || | ||||| | |||| ||| ||||| ||||| || Sbjct 9902725 CCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCAGAATGTAT 9902666 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| || || | ||| || || ||||||| | || || |||| || || ||| Sbjct 9902665 GTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGAACCTCTTG 9902606 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | |||||| | | | ||||||| | |||| || |||| ||| |||| || || | Sbjct 9902605 GCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAGAAAGCTAG 9902546 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTT 24622 |||||| |||||||||| ||| || || | || | || | | | || || Sbjct 9902545 AACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGTGCTGACTGTCCTT 9902486 Query 24623 AGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCA 24682 || | |||||| || ||| ||||||| || || ||||| || || |||||||| | ||| Sbjct 9902485 GGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTTATACATTTGCCA 9902426 Query 24683 GATGTCATGAT-ATTGA 24698 || ||||| | ||||| Sbjct 9902425 AATATCATGGTGATTGA 9902409 >seq131 Length=5549739 Score = 178 bits (196), Expect = 2e-39 Identities = 266/376 (71%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 24220 GCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 |||| ||||| ||| |||| || ||||||||||| |||||||| | | |||||||| | Sbjct 3233252 GCCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTA 3233193 Query 24280 TAA---GTCTTTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 24336 || || || | || || | ||| ||||| | |||||||| || | Sbjct 3233192 AAACATGTTCTTGTAGGTAGCCT-CTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTT 3233134 Query 24337 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTAT 24396 || | || ||||||||||| | || |||||||| ||||| | | |||| ||| || Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074 Query 24397 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 24456 |||||| || || ||||| | ||||| ||||||| ||||| |||||||| |||| | Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014 Query 24457 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTG 24516 || || || |||||||| | | || ||||| || |||||| | |||| ||| Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954 Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 | ||||||||||| |||| || ||||| |||||||| || |||| ||| | ||||| Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894 Query 24577 AATATTTTTCGTCTGG 24592 ||||| ||| || || Sbjct 3232893 AATATCGTTCCTCAGG 3232878 >seq260 Length=2306558 Score = 174 bits (192), Expect = 2e-38 Identities = 400/599 (67%), Gaps = 10/599 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 ||||| ||||||| || || | || | ||| |||||| ||||| ||||| | ||| Sbjct 2180269 TGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCA 2180328 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||| | || || ||||| | || | || || | | | ||||| || |||| Sbjct 2180329 CTGGAAAC--TTAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAA 2180386 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 || || | ||||| ||||||| || ||| ||||||| | || | ||||| || | Sbjct 2180387 GAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTA 2180446 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| ||||| | || ||| || || || |||||| |||||||| Sbjct 2180447 GCTTCTTTGTCCCCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATT 2180506 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || || ||||| |||||| | | |||| || |||||| || || ||||| Sbjct 2180507 GTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATA 2180562 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | |||||||||||||| |||| | |||||| |||| ||||| || | |||||||| Sbjct 2180563 AGGAGACTATACATTTCACAATGTAGTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAG 2180621 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | | || ||||| || ||||| | |||| || | ||||||||||| ||||| Sbjct 2180622 TGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATG 2180681 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || ||||| |||||||| || || | ||| ||||||||| ||| || | | | Sbjct 2180682 CCATCACTTGCTGCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAGATTTC 2180741 Query 24597 AGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGAT 24656 || | | | | || || || || ||| |||| || | |||| |||| || Sbjct 2180742 AGGGCTTCCTAGTGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAA 2180801 Query 24657 GCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | || ||||| ||| | || | ||| || ||||| ||| || ||||| | ||||| Sbjct 2180802 CCTTCAGCCTTCTTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860 >seq58 Length=10378366 Score = 145 bits (160), Expect = 9e-30 Identities = 291/426 (68%), Gaps = 23/426 (5%) Strand=Plus/Plus Query 24158 CTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTT 24217 ||| ||||| ||||| | ||| |||||||| ||||| || ||||| || | | || || Sbjct 1968820 CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATCAGCCGTCATTTCTT 1968879 Query 24218 AAGCCAAAATATG--GACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAG 24275 ||| || ||||| || ||||| || ||||||||||| ||| |||| || |||||| Sbjct 1968880 AAGTCAGAATATATTGATGCAAAAGAACCAGAAAAGAAGATTTCTTCCACATTAGCAAAG 1968939 Query 24276 GCAATAAGTCTT--TCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGG 24333 || | | || | |||||| || | | | ||||| || || |||| | Sbjct 1968940 GCTACA--TCATGCTCTCCACAAATAGACTTTT----TATCCTGATT----CCAAATCTG 1968989 Query 24334 CCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTAC 24393 ||||| || ||||||||||| | || | |||| |||| | | | |||||| || Sbjct 1968990 TTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTGAAGATAAATTCTTTTTCTTTGG 1969049 Query 24394 TATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGG 24453 || |||| |||| |||| | | ||| || ||| | ||||| || ||| | |||| Sbjct 1969050 AATTTTTA----ATGTGACAATAAGGAAACTGTATATTACAGAATGTATTTTTCCTATGG 1969105 Query 24454 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTT 24513 | ||||| ||||| |||||||| || || ||||| || | |||| | |||| | | Sbjct 1969106 CAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATTTGAATTTCTTGGCTAAATTGCT 1969165 Query 24514 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 24573 | || ||||||| | ||| || |||| |||| |||| |||| |||||| || Sbjct 1969166 TCACCAATTTTTCATGTATTATGCCATCAC---CTGCTAAAA--GCCAGAACATGTGCTA 1969220 Query 24574 TAAAAT 24579 |||||| Sbjct 1969221 TAAAAT 1969226 >seq30 Length=14751797 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 820401 CTGTTTCTTACACCATA 820417 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || ||| |||||||| |||||||| |||||||||||||| | || ||||| |||| || Sbjct 832087 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 832146 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 832147 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 832206 Query 54145 CGGTTCCAAGTATATGGTCATAACTCCAGGCCG 54177 ||||||| ||| || | | ||||||| || Sbjct 832207 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 832239 Score = 105 bits (116), Expect = 8e-18 Identities = 123/166 (74%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| |||| ||| |||||||||||||| | || || || || ||||| || || | | Sbjct 843145 CACTGAATACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATTCTTGCTGCCAAGA 843204 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 ||||||| || || || | ||||| | || || ||| |||| || | |||||| || | Sbjct 843205 TGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAGAGTATCTA 843264 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || |||||| | |||| |||||||| || ||||| Sbjct 843265 GTTCCACTGTGGTAACTCCACTGTATAAGCCTTGGATTACTTTCAT 843310 >seq3 Length=41493964 Score = 120 bits (132), Expect = 4e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 21931 TTGTACTTCTTTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 21990 ||| ||||||| | ||||||||| | || |||| | | || ||||| ||||||| ||| Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291 Query 21991 CCCCGTATTTACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCC 22050 || | ||||| | ||| | | ||| ||| ||||| | | || || |||||||| Sbjct 8287292 ACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCC 8287351 Query 22051 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 22107 ||||||||||| ||||| ||||| |||||| ||| || | |||| | ||| || Sbjct 8287352 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCC 8287411 Query 22108 AGACCTAGGAGCTATTCTACCATAGCA 22134 ||| | ||||||||||| |||||||| Sbjct 8287412 AGAACGTGGAGCTATTCTTCCATAGCA 8287438 >seq64 Length=9676502 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| ||||| || || || ||||||| Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 6351427 CTACAACACGTTCTCC 6351412 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24396 TCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 24455 ||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 6349677 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6349618 Query 24456 ATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 ||||| || || |||||||| | || || |||| || |||||| | |||||| || Sbjct 6349617 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 6349559 >seq2 Length=46620681 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| ||||| || ||||| || || | ||| || Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || |||||||||||||| || || |||||||| Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGCC 41377656 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 41377655 ACCACTCTTTCCCC 41377642 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 || ||||| ||||||| || ||||||| ||||| ||||||||| ||||| || ||| | Sbjct 41366933 ACCTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTTATACATTTTCCAAATATCAGGG 41366874 Query 24693 TATTGAATTGGAAAAATAACAAATC 24717 || || ||||||||||| ||||||| Sbjct 41366873 TACTGGATTGGAAAAATGACAAATC 41366849 >seq299 Length=1791600 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 24575 AAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 24634 |||||| || || |||| | | || || ||| | | | || ||| || |||| || || Sbjct 1082285 AAAATAATTCTCATCTGATTTAAGCTTGTTCTAGTGAAGGAGATCCTTTGATAAGTCAAC 1082226 Query 24635 TTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA 24694 ||||| ||||||| || ||||||| ||||| || |||||| ||||| || ||| | || Sbjct 1082225 CTCTTCTGCTGTCCAGAAGGATGCCTGTGCCTGTTCATACATTTTCCAAATATCAGGGTA 1082166 Query 24695 TTGAATTGGAAAAATAACAAAT 24716 ||||||||||| || |||||| Sbjct 1082165 CTGAATTGGAAATATGACAAAT 1082144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593628957165840