Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq61 233 2e-56 seq96 100 3e-16 >seq61 Length=9816117 Score = 233 bits (258), Expect = 2e-56 Identities = 254/337 (75%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| || || | | | | |||| | ||||| ||||||| |||||| Sbjct 998175 AGCAGGGCTTCAATGTCAGGTTCTATGTCGATGGTCGGAAAGCGGCGGCTGTATCTGCGC 998234 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || || ||||||| ||||||| ||||||||| ||||||||||| | || |||||| Sbjct 998235 ACCAGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATATCATTGCGG 998294 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| ||||||||| ||| | ||||||| ||| ||| | || ||| ||||| Sbjct 998295 CACACCGGAGACCAGATGATGTATTTGGGGTCGGTCATGAGTGCACTAGGGTCATCGCTG 998354 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 ||| | |||||||||| || ||||| |||||||| |||||||| | | || || ||| Sbjct 998355 GGCACTGGCAGGGCCTTCCGCAGGAATGCGAAGAGTGGATGTGCGTTGGAGCCATTCACC 998414 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 ||||||||||||||||| || || |||||||| ||| || || ||||||| ||| Sbjct 998415 TCGCACTTCTCGAAGAGGGGGAAATTGGGCTCGAACCCGCCACCGGGTCGGACGTACTTG 998474 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| ||||| |||| Sbjct 998475 AGGGAATTCAGAATCTCTTCGTTCTTCGCGTTCTCCT 998511 Score = 154 bits (170), Expect = 2e-32 Identities = 159/208 (76%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| |||| ||||| | || |||| Sbjct 998738 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAAGCCCCGGGGCCCGAGGC 998797 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 || ||| ||||||||||| || ||||| ||||| | |||| | ||||| || || || | Sbjct 998798 GCTTCTGTAGCTCGTTCATTTGGGTGTAGTCCCGAAGCGTGGTGCCTCAAAGAGAAGCCA 998857 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | |||| | |||| ||| || || |||| Sbjct 998858 CATTCTCGATGAGCAGCACCTTGCCCCGCAGAGAGCCCAGACTCAAAGGCTCCCCGCCGG 998917 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | |||||| || ||||||| |||||| Sbjct 998918 CCAGCGGGCGCGCGGAGAAGGTGTACAC 998945 >seq96 Length=7027464 Score = 100 bits (110), Expect = 3e-16 Identities = 199/287 (69%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| || ||||||||| || ||| Sbjct 3497205 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 3497147 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || | || || |||||||| || |||||||| | || ||| | ||||||| Sbjct 3497146 TGGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTACGCAAGCAGTACAACTGCA 3497087 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 |||||| |||||||| |||| || ||||| ||| | || |||| ||||| Sbjct 3497086 GCGGCTCTCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCAAGCTGATCCGCCACTAC 3497028 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647 |||||| |||| |||| ||| || || ||||| |||| ||||| ||| Sbjct 3497027 GTGCAGCTGCTCTACCCCCGGGCCAAAAATGACCGCGTCTGGACTCTGGAGTTCGTGGGC 3496968 Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 ||||||||||||||| ||||||| | |||||| || |||||| Sbjct 3496967 AAGCTGGACGAGCGCTGCAGGCGCCG--GGACACGGAGCAGAGGCGC 3496923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608701804869320