Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq61 233 2e-56
seq96 100 3e-16
>seq61
Length=9816117
Score = 233 bits (258), Expect = 2e-56
Identities = 254/337 (75%), Gaps = 0/337 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| || ||||| || || | | | | |||| | ||||| ||||||| ||||||
Sbjct 998175 AGCAGGGCTTCAATGTCAGGTTCTATGTCGATGGTCGGAAAGCGGCGGCTGTATCTGCGC 998234
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|| || ||||||| ||||||| ||||||||| ||||||||||| | || ||||||
Sbjct 998235 ACCAGCACACCGTCAGGGCCCACCAGGAACTTCTCAAAGTTCCAGGCAATATCATTGCGG 998294
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| ||||||||| ||| | ||||||| ||| ||| | || ||| |||||
Sbjct 998295 CACACCGGAGACCAGATGATGTATTTGGGGTCGGTCATGAGTGCACTAGGGTCATCGCTG 998354
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
||| | |||||||||| || ||||| |||||||| |||||||| | | || || |||
Sbjct 998355 GGCACTGGCAGGGCCTTCCGCAGGAATGCGAAGAGTGGATGTGCGTTGGAGCCATTCACC 998414
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
||||||||||||||||| || || |||||||| ||| || || ||||||| |||
Sbjct 998415 TCGCACTTCTCGAAGAGGGGGAAATTGGGCTCGAACCCGCCACCGGGTCGGACGTACTTG 998474
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
|||||| || ||||| | |||| ||||| ||||
Sbjct 998475 AGGGAATTCAGAATCTCTTCGTTCTTCGCGTTCTCCT 998511
Score = 154 bits (170), Expect = 2e-32
Identities = 159/208 (76%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| |||| ||||| | || ||||
Sbjct 998738 CCTGATGTCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAAGCCCCGGGGCCCGAGGC 998797
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|| ||| ||||||||||| || ||||| ||||| | |||| | ||||| || || || |
Sbjct 998798 GCTTCTGTAGCTCGTTCATTTGGGTGTAGTCCCGAAGCGTGGTGCCTCAAAGAGAAGCCA 998857
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||||||||||| ||| |||||| | |||| | |||| ||| || || ||||
Sbjct 998858 CATTCTCGATGAGCAGCACCTTGCCCCGCAGAGAGCCCAGACTCAAAGGCTCCCCGCCGG 998917
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| |||||| || ||||||| ||||||
Sbjct 998918 CCAGCGGGCGCGCGGAGAAGGTGTACAC 998945
>seq96
Length=7027464
Score = 100 bits (110), Expect = 3e-16
Identities = 199/287 (69%), Gaps = 7/287 (2%)
Strand=Plus/Minus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| || ||||||||| || |||
Sbjct 3497205 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATTGGCAACTTCGCCTCCCGCCTGC 3497147
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || | || || |||||||| || |||||||| | || ||| | |||||||
Sbjct 3497146 TGGTGCACCTCTTCCCGGAGCTCTTCACCCACGAGAACCTACGCAAGCAGTACAACTGCA 3497087
Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
|||||| |||||||| |||| || ||||| ||| | || |||| |||||
Sbjct 3497086 GCGGCTCTCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCAAGCTGATCCGCCACTAC 3497028
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTGGCG 50647
|||||| |||| |||| ||| || || ||||| |||| ||||| |||
Sbjct 3497027 GTGCAGCTGCTCTACCCCCGGGCCAAAAATGACCGCGTCTGGACTCTGGAGTTCGTGGGC 3496968
Query 50648 TGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693
||||||||||||||| ||||||| | |||||| || ||||||
Sbjct 3496967 AAGCTGGACGAGCGCTGCAGGCGCCG--GGACACGGAGCAGAGGCGC 3496923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608701804869320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |