Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq14 141 1e-28
seq126 123 3e-23
seq90 120 3e-22
seq13 104 2e-17
seq1607 91.5 2e-13
seq59 91.5 2e-13
seq739 87.8 2e-12
seq64 82.4 8e-11
>seq14
Length=21378024
Score = 141 bits (156), Expect = 1e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || |||||||| ||||||||| |||| || || |||
Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | ||||||| ||||| ||||||||||| | || |||
Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | ||||||||||||||||| || | ||||| ||| || ||||||
Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| |||| ||||| | ||| | ||| || | || |||
Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 6329958
>seq126
Length=5838822
Score = 123 bits (136), Expect = 3e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | |||||||| ||||||||| |||| || || |||
Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | ||||||| ||||| ||||||||||| | || |||
Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| || || || | || |||||||||||||| || | | ||| ||| || |||| |
Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||| ||| |||| ||||| | ||| | ||| || | || |||
Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 680965
>seq90
Length=7592057
Score = 120 bits (132), Expect = 3e-22
Identities = 117/151 (77%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||| |||||||||||| | |||||||| | || |||| |
Sbjct 463996 TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTG 464055
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885
| || || |||||||| || | ||||||||| |||||||| ||||||||||| |||
Sbjct 464056 CCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAATATCCAGAAGGAATCCA 464115
Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
| |||||| | || ||||||||||||| ||
Sbjct 464116 CTCTGCATTTGGTCCTGCGCTTGAGGGGGGG 464146
>seq13
Length=21495731
Score = 104 bits (114), Expect = 2e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|| || || || || || || || | ||||| ||||||||| |||| ||||| |||
Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||| | |||| ||| ||| | ||||||||||| | || |||
Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAG 9191821
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | || || |||||||| || || || ||||| ||| || ||||||
Sbjct 9191822 CAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAAC 9191881
Query 40870 ATCCAGAAGGAGGCCACGCT 40889
|||||||| ||| |||| ||
Sbjct 9191882 ATCCAGAAAGAGTCCACTCT 9191901
>seq1607
Length=19272
Score = 91.5 bits (100), Expect = 2e-13
Identities = 159/228 (70%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || ||||| || ||||||||| | || || || |||
Sbjct 6182 ATGCAGATCTTGGTGAAGACCCTGACGGGTAAGACCATCACCCTAGAGGTGGAGCCCAGT 6241
Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
||| | || || | |||||| ||| || | | || || | ||||||| | ||||
Sbjct 6242 GACTCCACTGAGAATG-TCAAGGCAAAGATCC---AAAAGGAAGACATCCCCCCTGACCT 6297
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| || |||||| ||||| || | |||||||| |||||||
Sbjct 6298 GCACAGGTTGATCTTTGCTGGCAAAATTCTGGAAGATGTTTGCACCCTCTCTGACTACAG 6357
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| ||||| | || ||| |||| |||| ||
Sbjct 6358 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCACTTGTGGGGAGG 6405
>seq59
Length=10161055
Score = 91.5 bits (100), Expect = 2e-13
Identities = 398/619 (64%), Gaps = 22/619 (4%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAAT-ACCCGGA 116634
|| || || ||||| |||||| || ||| || | || || | | |||| ||| ||
Sbjct 9902364 GAACCACTACTGCGAGAGAACTCC-GCCACTTTGCCATGTTTGCTGT-CAATCACCATGA 9902421
Query 116635 CATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694
|| |||| ||||| || || ||||||||||| |||||||| | ||||||||||| ||
Sbjct 9902422 TATTTGGCAAATGTATAAGAAAGCCGAGGCGTCCTTCTGGACAGCGGAGGAGGTGGATCT 9902481
Query 116695 GTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753
|||||||||| ||| || || || | |||| | || | |||| || |
Sbjct 9902482 TTCCAAGGACAGTCAGC-ACCGGCAGGCCCTGAAGCCTGAGGAATGATATTTTATATCAC 9902540
Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-T 116812
| || || || || || | || | || ||||| | | || |||||||| |||| |
Sbjct 9902541 ATGTTCTAGCTTTCTTTGAAGCACGTGATGGCATAGCAAGTGAAAATCTGGTGCAGCGAT 9902600
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
|| || || ||||| || | || || | || |||| ||||| || | || |||
Sbjct 9902601 TTAGC-CAAGAGGTTCAAATTATAGAAGCCGGCTGTTTCTGTGGCTTCCAAGTTGCTATG 9902659
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932
|| ||| | || || ||||| ||| ||| || |||| ||| | ||| |
Sbjct 9902660 GAAAACATACATTCTGAAATATATGGTCTCCTTATTGACATTTACATTAAAAATTCCTAA 9902719
Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992
|| | | | | | | ||||| || | |||||| || || || |||| || ||
Sbjct 9902720 GACAGGGAATTTCTCTCCAGTGCCATTGAAATGATGCCTTGGGTGAAGAAGAAAGCAGAC 9902779
Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052
|| || || | |||| | | || ||| || ||| | | | || | || | |||
Sbjct 9902780 TGTGCCTTGTGTTGGACTGGGGACAAAGAAGCTACCTACAGAAAACGTGTTGTAGTCTT- 9902838
Query 117053 GCGGCCGTCGAGGGCG---TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC--A 117107
|||| ||| | |||||||||| ||| || || | |||||||||||| |
Sbjct 9902839 --GGCCACTACGGGAGAAATCTTCTTTTCTGGCTCATTTGCATCAATATTTTGGCTCATA 9902896
Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167
|||| || ||||| ||||| || || ||| || || ||| ||| |||||||
Sbjct 9902897 AGAA-------CTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGACGAGG 9902949
Query 117168 GTCTGCATTGCGACTTTGC 117186
|| | || | || |||||
Sbjct 9902950 GTTTACACTCTGAATTTGC 9902968
>seq739
Length=148672
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/228 (69%), Gaps = 5/228 (2%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || | || || || || ||||| ||||||||| | || || || |||
Sbjct 36420 ATGCAGATCTTGATGAAGACCCTGACAGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 36479
Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || || | |||||| ||| || | | || || | ||||||| | | |
Sbjct 36480 GACACCACTGAGAATG-TCAAGGCAAAGATCC---AAAAGGAAGACATCCCCCCTAATCG 36535
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | ||||| || |||||| ||| | || | | |||||||| |||||||
Sbjct 36536 GCACAGGTTGATCTATGCTGGCAAAATTCTGAAAGAGGGGTGCACCCTCTCTGACTACAG 36595
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| |||| ||||| | || |||||||| | || ||
Sbjct 36596 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGTGAGGAGG 36643
>seq64
Length=9676502
Score = 82.4 bits (90), Expect = 8e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || || ||| | |||||||||||||| || || || || || || |||||| |||
Sbjct 6348428 GAACCACTACTGAGAGAGAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCATGAC 6348487
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688
|| |||| ||||| || || || ||||| || || ||||| | |||||||||
Sbjct 6348488 ATCTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGT 6348540
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515138806484080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |