Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq14 141 1e-28 seq126 123 3e-23 seq90 120 3e-22 seq13 104 2e-17 seq1607 91.5 2e-13 seq59 91.5 2e-13 seq739 87.8 2e-12 seq64 82.4 8e-11 >seq14 Length=21378024 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || |||||||| ||||||||| |||| || || ||| Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||||| ||||| ||||||||||| | || ||| Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||||||||||||||||| || | ||||| ||| || |||||| Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| | ||| | ||| || | || ||| Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 6329958 >seq126 Length=5838822 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | |||||||| ||||||||| |||| || || ||| Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||||| ||||| ||||||||||| | || ||| Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | || |||||||||||||| || | | ||| ||| || |||| | Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| |||| ||||| | ||| | ||| || | || ||| Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGGC 680965 >seq90 Length=7592057 Score = 120 bits (132), Expect = 3e-22 Identities = 117/151 (77%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||| |||||||||||| | |||||||| | || |||| | Sbjct 463996 TCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTG 464055 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCA 40885 | || || |||||||| || | ||||||||| |||||||| ||||||||||| ||| Sbjct 464056 CCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAATATCCAGAAGGAATCCA 464115 Query 40886 CGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 | |||||| | || ||||||||||||| || Sbjct 464116 CTCTGCATTTGGTCCTGCGCTTGAGGGGGGG 464146 >seq13 Length=21495731 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 || || || || || || || || | ||||| ||||||||| |||| ||||| ||| Sbjct 9191702 ATTCAGATCTTTGTGAAGACCCTGATAGGCAAGACCATCACCCTCGAGGTCGAGCCCAGT 9191761 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | |||| ||| ||| | ||||||||||| | || ||| Sbjct 9191762 GACACCATCGAGAATGTCAAAGCAAAATTTCAAGACCAGGAGGGCATCCCACCTGATCAG 9191821 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | || || |||||||| || || || ||||| ||| || |||||| Sbjct 9191822 CAGCATCTGATATTTGCAGGTAAACAGCTAGAGGATGACCGCACTCTCTCAGATTACAAC 9191881 Query 40870 ATCCAGAAGGAGGCCACGCT 40889 |||||||| ||| |||| || Sbjct 9191882 ATCCAGAAAGAGTCCACTCT 9191901 >seq1607 Length=19272 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || ||||| || ||||||||| | || || || ||| Sbjct 6182 ATGCAGATCTTGGTGAAGACCCTGACGGGTAAGACCATCACCCTAGAGGTGGAGCCCAGT 6241 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | || || | |||||| ||| || | | || || | ||||||| | |||| Sbjct 6242 GACTCCACTGAGAATG-TCAAGGCAAAGATCC---AAAAGGAAGACATCCCCCCTGACCT 6297 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || |||||| ||||| || | |||||||| ||||||| Sbjct 6298 GCACAGGTTGATCTTTGCTGGCAAAATTCTGGAAGATGTTTGCACCCTCTCTGACTACAG 6357 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || ||| |||| |||| || Sbjct 6358 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCACTTGTGGGGAGG 6405 >seq59 Length=10161055 Score = 91.5 bits (100), Expect = 2e-13 Identities = 398/619 (64%), Gaps = 22/619 (4%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAAT-ACCCGGA 116634 || || || ||||| |||||| || ||| || | || || | | |||| ||| || Sbjct 9902364 GAACCACTACTGCGAGAGAACTCC-GCCACTTTGCCATGTTTGCTGT-CAATCACCATGA 9902421 Query 116635 CATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCT 116694 || |||| ||||| || || ||||||||||| |||||||| | ||||||||||| || Sbjct 9902422 TATTTGGCAAATGTATAAGAAAGCCGAGGCGTCCTTCTGGACAGCGGAGGAGGTGGATCT 9902481 Query 116695 GTCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 |||||||||| ||| || || || | |||| | || | |||| || | Sbjct 9902482 TTCCAAGGACAGTCAGC-ACCGGCAGGCCCTGAAGCCTGAGGAATGATATTTTATATCAC 9902540 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG-T 116812 | || || || || || | || | || ||||| | | || |||||||| |||| | Sbjct 9902541 ATGTTCTAGCTTTCTTTGAAGCACGTGATGGCATAGCAAGTGAAAATCTGGTGCAGCGAT 9902600 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || || || ||||| || | || || | || |||| ||||| || | || ||| Sbjct 9902601 TTAGC-CAAGAGGTTCAAATTATAGAAGCCGGCTGTTTCTGTGGCTTCCAAGTTGCTATG 9902659 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 || ||| | || || ||||| ||| ||| || |||| ||| | ||| | Sbjct 9902660 GAAAACATACATTCTGAAATATATGGTCTCCTTATTGACATTTACATTAAAAATTCCTAA 9902719 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 || | | | | | | ||||| || | |||||| || || || |||| || || Sbjct 9902720 GACAGGGAATTTCTCTCCAGTGCCATTGAAATGATGCCTTGGGTGAAGAAGAAAGCAGAC 9902779 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 || || || | |||| | | || ||| || ||| | | | || | || | ||| Sbjct 9902780 TGTGCCTTGTGTTGGACTGGGGACAAAGAAGCTACCTACAGAAAACGTGTTGTAGTCTT- 9902838 Query 117053 GCGGCCGTCGAGGGCG---TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTC--A 117107 |||| ||| | |||||||||| ||| || || | |||||||||||| | Sbjct 9902839 --GGCCACTACGGGAGAAATCTTCTTTTCTGGCTCATTTGCATCAATATTTTGGCTCATA 9902896 Query 117108 AGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 |||| || ||||| ||||| || || ||| || || ||| ||| ||||||| Sbjct 9902897 AGAA-------CTGATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGACGAGG 9902949 Query 117168 GTCTGCATTGCGACTTTGC 117186 || | || | || ||||| Sbjct 9902950 GTTTACACTCTGAATTTGC 9902968 >seq739 Length=148672 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/228 (69%), Gaps = 5/228 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || | || || || || ||||| ||||||||| | || || || ||| Sbjct 36420 ATGCAGATCTTGATGAAGACCCTGACAGGCAAGACCATCACCCTAGAGGTGGAGCCCAGT 36479 Query 40750 GACAGCG-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || || | |||||| ||| || | | || || | ||||||| | | | Sbjct 36480 GACACCACTGAGAATG-TCAAGGCAAAGATCC---AAAAGGAAGACATCCCCCCTAATCG 36535 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | ||||| || |||||| ||| | || | | |||||||| ||||||| Sbjct 36536 GCACAGGTTGATCTATGCTGGCAAAATTCTGAAAGAGGGGTGCACCCTCTCTGACTACAG 36595 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| |||| ||||| | || |||||||| | || || Sbjct 36596 CATCCAGAAGGAATCCACTCTGCACTTGGTCCTGCGCTTGTGAGGAGG 36643 >seq64 Length=9676502 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || ||| | |||||||||||||| || || || || || || |||||| ||| Sbjct 6348428 GAACCACTACTGAGAGAGAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCATGAC 6348487 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGT 116688 || |||| ||||| || || || ||||| || || ||||| | ||||||||| Sbjct 6348488 ATCTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGT 6348540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515138806484080