Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_001987.1
Length=108409
Score E
Sequences producing significant alignments: (Bits) Value
seq394 96.9 2e-15
>seq394
Length=841001
Score = 96.9 bits (106), Expect = 2e-15
Identities = 285/434 (66%), Gaps = 4/434 (1%)
Strand=Plus/Plus
Query 97032 AAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTG 97091
|||||| | | || || ||||||||||||| ||||| | |||||||| |||| ||
Sbjct 665323 AAGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATG 665382
Query 97092 AATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAA-TAGAGAAT 97150
||||| || || || | || ||| || || | ||| ||| ||| || | ||
Sbjct 665383 CATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCAT 665442
Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210
|||| ||||| | ||||| | || | ||||| | |||| || || || | | |
Sbjct 665443 AGCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGC 665502
Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCA 97270
|||| |||| | |||| | || ||||| | | ||||| || || |||| | ||
Sbjct 665503 AGGACAGCTCCCATTCAC-CTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGCAGCA 665561
Query 97271 TTTTTGGAACATC-TAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTT 97329
| |||| ||| | | |||||| ||||||| | |||||||| | |||||
Sbjct 665562 TCAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTCTTCTGGCTTCAGGGTTG 665621
Query 97330 GTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGC 97389
|| | ||||| || || | | | | || || || |||| || |||||
Sbjct 665622 GTTTTGATGGTGTTGATCACTTTTTGCAGATGGTCTACTCCTTGATCAGAATAATCTGAA 665681
Query 97390 TTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGG 97449
| | ||||| | || ||| | |||||| ||||| ||||| |||||||| || |||||
Sbjct 665682 TCCACACCTTTGTGTTTTGCCCAAAAATGTCTCCACTGGAAGCCATAAACTGGGACAAGG 665741
Query 97450 TCTCCTTCTTCTCT 97463
|| |||| || |||
Sbjct 665742 TC-CCTTTTTTTCT 665754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346731241474310
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |