Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq394 96.9 2e-15 >seq394 Length=841001 Score = 96.9 bits (106), Expect = 2e-15 Identities = 285/434 (66%), Gaps = 4/434 (1%) Strand=Plus/Plus Query 97032 AAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTG 97091 |||||| | | || || ||||||||||||| ||||| | |||||||| |||| || Sbjct 665323 AAGCTGAATTTTCAGTGCCTCAATGTGATTCAGTTAAATACGTGCATCTCCCAAAGAATG 665382 Query 97092 AATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAA-TAGAGAAT 97150 ||||| || || || | || ||| || || | ||| ||| ||| || | || Sbjct 665383 CATAAAGTCCCCTGGCTGCAGGTCCCTGATGTGCGCAACCATGTAAGGTAAGCAGGGCAT 665442 Query 97151 AGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGAC 97210 |||| ||||| | ||||| | || | ||||| | |||| || || || | | | Sbjct 665443 AGCTGTCAATGCTGAAAGGTATGCCCAAGCCCATGACTCCTGACCTATGGTACATCCAGC 665502 Query 97211 AGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCA 97270 |||| |||| | |||| | || ||||| | | ||||| || || |||| | || Sbjct 665503 AGGACAGCTCCCATTCAC-CTTGTAGAACTGGCAGAGGACATGGCATGGAGGCAGCAGCA 665561 Query 97271 TTTTTGGAACATC-TAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTT 97329 | |||| ||| | | |||||| ||||||| | |||||||| | ||||| Sbjct 665562 TCAGAGGAAAATCTTTTGGAGTTCCAAACACACATGATAATTCTTCTGGCTTCAGGGTTG 665621 Query 97330 GTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGC 97389 || | ||||| || || | | | | || || || |||| || ||||| Sbjct 665622 GTTTTGATGGTGTTGATCACTTTTTGCAGATGGTCTACTCCTTGATCAGAATAATCTGAA 665681 Query 97390 TTAAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGG 97449 | | ||||| | || ||| | |||||| ||||| ||||| |||||||| || ||||| Sbjct 665682 TCCACACCTTTGTGTTTTGCCCAAAAATGTCTCCACTGGAAGCCATAAACTGGGACAAGG 665741 Query 97450 TCTCCTTCTTCTCT 97463 || |||| || ||| Sbjct 665742 TC-CCTTTTTTTCT 665754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346731241474310