Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq14 158 1e-33
seq126 145 7e-30
seq13 140 3e-28
>seq14
Length=21378024
Score = 158 bits (174), Expect = 1e-33
Identities = 161/210 (77%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || ||||||||||| | |||||| ||||||
Sbjct 6329940 CACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGCCATCCTC 6329881
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || |||||||||||||| || || |||||||||||||||
Sbjct 6329880 CAGCTGTTTGCCCGCAAATATCAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 6329821
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||||| ||| || | |||| |||||| || ||| ||||||| ||| | || ||
Sbjct 6329820 AATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 6329761
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| ||||| || || ||||| ||||||||
Sbjct 6329760 GCCCGTCAGGGTCTTCACAAAGATCTGCAT 6329731
>seq126
Length=5838822
Score = 145 bits (160), Expect = 7e-30
Identities = 158/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || |||||||| || ||| ||||||| | |||| | ||||||
Sbjct 680947 CACCAAGTGCAGGGTGGACTCTTTCTGGATGCTGTAATCTGAGAGAGTGTGGCCATCCTC 680888
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || |||||||||||||| || || |||||||||||||||
Sbjct 680887 CAGCTGTTTGCCTGCAAATATTAGACGCTGCTGATCAGGTGGGATGCCCTCCTTGTCTTG 680828
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|||||| ||| || | |||| |||||| || ||| ||||||| ||| | || ||
Sbjct 680827 AATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 680768
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || ||||| ||||||||
Sbjct 680767 GCCCGTCATGGTCTTCACAAAGATCTGCAT 680738
>seq13
Length=21495731
Score = 140 bits (154), Expect = 3e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
|||||||| | || |||||||| || ||||||||||| | |||||| ||||||
Sbjct 9191911 CACCAAGTATAGAGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAGTGCGGTCATCCTC 9191852
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|||||||| || || | || ||| |||||||||| || || |||||||||| ||||
Sbjct 9191851 TAGCTGTTTACCTGCAAATATCAGATGCTGCTGATCAGGTGGGATGCCCTCCTGGTCTTG 9191792
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| |||| ||| || | |||| |||||| || ||||||||||| ||| | || ||
Sbjct 9191791 AAATTTTGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTT 9191732
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| |||| || || ||||| ||||| ||
Sbjct 9191731 GCCTATCAGGGTCTTCACAAAGATCTGAAT 9191702
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433764398534236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |