Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq42 91.5 3e-13 seq3 84.2 4e-11 >seq42 Length=12273399 Score = 91.5 bits (100), Expect = 3e-13 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 || ||||| ||||| ||| | ||||| || |||||||| ||||||||| | || ||||| Sbjct 10271148 GCGTTTTTCGGAGCCCAGATGAATTCCTTCATCCATGTGATTATGTACTCATACTATGGG 10271207 Query 52117 ATGGCCGCTTGTGGTCCTATG-TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175 | |||| | ||| || | ||||||| |||||| ||||||||||| || || || || Sbjct 10271208 TTAACCGCCTTTGGCCCGTGGATTCAGAA-GTATCTTTGGTGGAAACGATACCTAACCAT 10271266 Query 52176 AATGCAGTTGGT 52187 ||||| |||| Sbjct 10271267 GTTGCAGCTGGT 10271278 >seq3 Length=41493964 Score = 84.2 bits (92), Expect = 4e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 42515 TGAGCTATCCTATCACCCTTACATACATTAAA-TTGAGTTGATCCGAAGTTAAATAATAA 42573 || ||||| | |||||| || ||| | ||| || || | || || ||||| || | Sbjct 8287278 TGTGCTATTCGATCACCTTTTTTTACTTCAAACTTCTCTTTA-CCAAAATTAAACAACAC 8287336 Query 42574 AACGCCCACGTTTCCTCTATAGTCTGAGTCAATTACGCCAGCACCTACGTCTATAAAATA 42633 ||| || | ||||||||||| ||| || || || ||||| ||||| ||||| || || Sbjct 8287337 AACACCAATATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTA 8287396 Query 42634 ATTATAAGCAAGCCCCGATCTAGGAGCTATTCTACCGTAGTATCCGTTAGGTATTTTTAG 42693 || ||| || || || | ||||||||||| || ||| | || ||| | || Sbjct 8287397 TTTTGCAGCCAGGCCAGAACGTGGAGCTATTCTTCCATAGCACCCAGAAGGAAGAGCTAT 8287456 Query 42694 AATTATATCTGTTTTTATCAGTTCTTTATTCATAGGCTCTATTACATAATCATACGCGCT 42753 || |||||||| | || |||| | |||||| || || ||||||||| || || Sbjct 8287457 CTGAATGTCTGTTTTCACAAGGGCTTTCTCCATAGGTGGTACTATATAATCATAGGCACT 8287516 Query 42754 ATATAAGTCATAACCCGC 42771 || | ||| || || || Sbjct 8287517 GTACAGGTCGTAGCCTGC 8287534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923052746679320