Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 6e-14 >seq3 Length=41493964 Score = 93.3 bits (102), Expect = 6e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488 ||||| || || |||| |||| ||||||| | |||| | ||| ||| | || | Sbjct 8287449 TTCCTTCTGGGTGCTATGGAAGAATAGCTCCACGTTCTGGCCTGGCTGCAAAATACTTCA 8287390 Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548 | ||| | |||||||| || || || |||||||||||||||||| | || || | || | Sbjct 8287389 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATATTGGTGTTGTGTTGT 8287330 Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608 ||||| | ||| || | ||| | |||| | ||| ||| ||||| | || | || | Sbjct 8287329 TTAATTTTGGTAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATAGCACAGCTCATTT 8287270 Query 10609 GTGAAAAAATTTTATATCC 10627 ||||| ||||| ||||| Sbjct 8287269 GTGAACGGATTTTTTATCC 8287251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743410381999360