Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq3 93.3 6e-14
>seq3
Length=41493964
Score = 93.3 bits (102), Expect = 6e-14
Identities = 140/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 10429 TTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGATCTGATTTAGCTCTAAATAAATTTA 10488
||||| || || |||| |||| ||||||| | |||| | ||| ||| | || |
Sbjct 8287449 TTCCTTCTGGGTGCTATGGAAGAATAGCTCCACGTTCTGGCCTGGCTGCAAAATACTTCA 8287390
Query 10489 TTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAATATTAT 10548
| ||| | |||||||| || || || |||||||||||||||||| | || || | || |
Sbjct 8287389 TAGATGTAGGAGCTGGTGTCATAGATGAAGATTATAGAGGAAATATTGGTGTTGTGTTGT 8287330
Query 10549 TTAATCATTCTAATGAAGATTTTATAATAAATAGAGGAGATAGAATATCTCAATTAATAT 10608
||||| | ||| || | ||| | |||| | ||| ||| ||||| | || | || |
Sbjct 8287329 TTAATTTTGGTAAAGAGAAGTTTGAAGTAAAAAAAGGTGATCGAATAGCACAGCTCATTT 8287270
Query 10609 GTGAAAAAATTTTATATCC 10627
||||| ||||| |||||
Sbjct 8287269 GTGAACGGATTTTTTATCC 8287251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743410381999360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |