Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq536 224 9e-54 seq299 167 2e-36 seq2 102 8e-17 seq64 89.7 5e-13 >seq536 Length=337149 Score = 224 bits (248), Expect = 9e-54 Identities = 541/816 (66%), Gaps = 47/816 (6%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 ||||||| ||| ||| | | ||| ||||||| || ||| ||||| ||| ||||| Sbjct 201730 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATTT 201789 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||| ||| |||||||| || ||||| ||||||| ||||||||| | Sbjct 201790 TCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCT 201849 Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059 ||||||| | ||| ||||||| ||||| ||| | || | | |||| | || Sbjct 201850 CCATAAAGTTAAATGGATTTTCTACTTTGAA-AATCTTGTTAA----AGCCCAGCTTCAG 201904 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 || | ||||| ||||||||||| || ||||| ||||| ||| || ||||| || || Sbjct 201905 CATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 201964 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 || || |||| | |||||||| | || | | ||||| || | || | || || Sbjct 201965 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAAT 202024 Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----TGTTTAAACATTATAC 16235 | | ||| ||||| | || | | || ||||| ||| ||||| | ||| | | Sbjct 202025 TGTTTCTTTTACT-CTCTGCT---CTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGC 202080 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| ||||| || || || || || || || || | || || |||||||| || | Sbjct 202081 AGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGC 202140 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| ||||||||||| | ||| ||||||||||| | Sbjct 202141 CAGGCATCAGTCCTCGTTTCT----------------------TGAGCCAGAAAAGAAGA 202178 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttc 16413 | | || | || ||||| || || | || || || || || || ||| | | | Sbjct 202179 TTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCC--CC 202236 Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 ||| | | ||||| | ||||| | || ||||| ||| | || | ||||| Sbjct 202237 AATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATT 202294 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 || | | | | |||||||| ||| ||||||||| || || || | ||||||||| Sbjct 202295 GAAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACAT 202354 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| || || ||||| || || || || ||||| || | | ||||| | || Sbjct 202355 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAAT 202414 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| | ||| || | || || || || ||||| | ||| | || || Sbjct 202415 TTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGC 202474 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 | | || || || ||||| | ||||||| || ||| Sbjct 202475 AGAGAAAGCCAGAATGTGGAT-ATAAAATATTGTTC 202509 >seq299 Length=1791600 Score = 167 bits (184), Expect = 2e-36 Identities = 292/423 (69%), Gaps = 8/423 (2%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || |||| | || ||||||||||||||||| |||||||| ||||| |||||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066 ||||||||||| ||||||| || | | || | |||| | ||||| | |||| Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAAT 1083309 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 || || || | |||||| |||||||| |||| ||| |||||||||| | || | | Sbjct 1083308 CTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 1083249 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186 || || | ||||||||||||| | | || || || || || | || || || || Sbjct 1083248 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCC 1083189 Query 16187 CTTACTACACTATTTAACGGAGG----GTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 || || || || | || | |||| ||||| | ||||| || |||||||| Sbjct 1083188 CT---CACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAA 1083132 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 ||| | | | | |||| || || | || | ||| || |||||||| || || || || Sbjct 1083131 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGAT 1083072 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 | |||| || || | ||| || |||| ||||| || || | ||||| || ||||| Sbjct 1083071 GGGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTC 1083013 Query 16363 AAC 16365 || Sbjct 1083012 CAC 1083010 Score = 98.7 bits (108), Expect = 9e-16 Identities = 204/298 (68%), Gaps = 7/298 (2%) Strand=Plus/Minus Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335 ||| || ||||||||||| || || || | |||| || || | ||| || ||||| || Sbjct 1082831 CTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGC 1082772 Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395 ||| || || || ||||| || ||||| || | | || |||| || || || | Sbjct 1082771 AAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTCCCCAAA 1082712 Query 16396 CGTTCTAtttttactttctatccattttttagcccaatttgctttttgt-ttAACACAGT 16454 || ||| || | |||||||| ||||| | |||||||| | ||||| | Sbjct 1082711 AGTAGACTTTCTATCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAACGTATG 1082652 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtt--tttttCTTTGCTATCTAAAATATAAGT 16512 ||| | | ||||||||||||||| |||| |||| ||| |||| || |||| Sbjct 1082651 GCATTGTTTTAATTGCATTAAATAAA-AATTCCCCTTTC-TTGGAATCTCTGATTCAAGT 1082594 Query 16513 ATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCA 16570 ||||||||| ||||||| || | ||| |||| ||||| || || ||||||||| Sbjct 1082593 ATCTATTAGCAAACTAT--ATCTTTGAGTGAACATTCTTTATGAGAATTTGAAAACCA 1082538 >seq2 Length=46620681 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | || || || |||||| | | | || |||||| | | Sbjct 41397925 TTTAAAAATCTGCATCCAAAGTGAAGACGTTATCTGTGGTTTCTGCCATAACGGCAAAAC 41397866 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 41397865 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 41397806 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 41397805 CCATAAAATCAAAGGGATTTTCTG 41397782 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||||| ||||| | |||||| || || ||||| || |||||||||||||| ||| ||| Sbjct 41384706 ATCCCAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 41384647 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 ||||||| || || | ||| || | |||||||||||||| Sbjct 41384646 AGTTCATCCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 41384604 >seq64 Length=9676502 Score = 89.7 bits (98), Expect = 5e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || || || || || ||||| || Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426 Query 16379 AC 16380 || Sbjct 6351425 AC 6351424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462439830783800