Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq536 224 9e-54
seq299 167 2e-36
seq2 102 8e-17
seq64 89.7 5e-13
>seq536
Length=337149
Score = 224 bits (248), Expect = 9e-54
Identities = 541/816 (66%), Gaps = 47/816 (6%)
Strand=Plus/Plus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
||||||| ||| ||| | | ||| ||||||| || ||| ||||| ||| |||||
Sbjct 201730 TTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTCCCATTT 201789
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
| ||||| || | |||| ||| |||||||| || ||||| ||||||| ||||||||| |
Sbjct 201790 TCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCT 201849
Query 16005 CCATAAAATCAAAAGGATTTT-----TTGAACAATAGTATTTATCGCATCCCAATTCCAA 16059
||||||| | ||| ||||||| ||||| ||| | || | | |||| | ||
Sbjct 201850 CCATAAAGTTAAATGGATTTTCTACTTTGAA-AATCTTGTTAA----AGCCCAGCTTCAG 201904
Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119
|| | ||||| ||||||||||| || ||||| ||||| ||| || ||||| || ||
Sbjct 201905 CATAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAAT 201964
Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179
|| || |||| | |||||||| | || | | ||||| || | || | || ||
Sbjct 201965 TAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAAT 202024
Query 16180 TATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG----TGTTTAAACATTATAC 16235
| | ||| ||||| | || | | || ||||| ||| ||||| | ||| | |
Sbjct 202025 TGTTTCTTTTACT-CTCTGCT---CTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGC 202080
Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295
| ||||| ||||| || || || || || || || || | || || |||||||| || |
Sbjct 202081 AGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGC 202140
Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355
| ||||| ||||||||||| | ||| ||||||||||| |
Sbjct 202141 CAGGCATCAGTCCTCGTTTCT----------------------TGAGCCAGAAAAGAAGA 202178
Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttc 16413
| | || | || ||||| || || | || || || || || || ||| | | |
Sbjct 202179 TTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCC--CC 202236
Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473
||| | | ||||| | ||||| | || ||||| ||| | || | |||||
Sbjct 202237 AATCAAATGCAAGGCCCA--TGGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATT 202294
Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533
|| | | | | |||||||| ||| ||||||||| || || || | |||||||||
Sbjct 202295 GAAGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACAT 202354
Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593
||| ||||| || || ||||| || || || || ||||| || | | ||||| | ||
Sbjct 202355 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAAT 202414
Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653
||| ||||| | ||| || | || || || || ||||| | ||| | || ||
Sbjct 202415 TTGAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGC 202474
Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689
| | || || || ||||| | ||||||| || |||
Sbjct 202475 AGAGAAAGCCAGAATGTGGAT-ATAAAATATTGTTC 202509
>seq299
Length=1791600
Score = 167 bits (184), Expect = 2e-36
Identities = 292/423 (69%), Gaps = 8/423 (2%)
Strand=Plus/Minus
Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006
||||| || |||| | || ||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAAT 16066
||||||||||| ||||||| || | | || | |||| | ||||| | ||||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTTTGAGAATCCAAGTTCCATAAGTAAT 1083309
Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126
|| || || | |||||| |||||||| |||| ||| |||||||||| | || | |
Sbjct 1083308 CTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCCA 1083249
Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATATCT 16186
|| || | ||||||||||||| | | || || || || || | || || || ||
Sbjct 1083248 ACTGGCAAGTCTTCTGTTAAAAACTCCTGCTCAATTTTGACAGCATTAACAATGATCTCC 1083189
Query 16187 CTTACTACACTATTTAACGGAGG----GTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242
|| || || || | || | |||| ||||| | ||||| || ||||||||
Sbjct 1083188 CT---CACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCAAA 1083132
Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302
||| | | | | |||| || || | || | ||| || |||||||| || || || ||
Sbjct 1083131 GTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGGAT 1083072
Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362
| |||| || || | ||| || |||| ||||| || || | ||||| || |||||
Sbjct 1083071 GGGACCTCTCTTCTTTAACCAGAAAATAGTAGCAAA-GATCCTCAGAAGAAAATTCCTTC 1083013
Query 16363 AAC 16365
||
Sbjct 1083012 CAC 1083010
Score = 98.7 bits (108), Expect = 9e-16
Identities = 204/298 (68%), Gaps = 7/298 (2%)
Strand=Plus/Minus
Query 16276 CTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGC 16335
||| || ||||||||||| || || || | |||| || || | ||| || ||||| ||
Sbjct 1082831 CTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATAGCAGC 1082772
Query 16336 AAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA 16395
||| || || || ||||| || ||||| || | | || |||| || || || |
Sbjct 1082771 AAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTCCCCAAA 1082712
Query 16396 CGTTCTAtttttactttctatccattttttagcccaatttgctttttgt-ttAACACAGT 16454
|| ||| || | |||||||| ||||| | |||||||| | ||||| |
Sbjct 1082711 AGTAGACTTTCTATCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAACGTATG 1082652
Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtt--tttttCTTTGCTATCTAAAATATAAGT 16512
||| | | ||||||||||||||| |||| |||| ||| |||| || ||||
Sbjct 1082651 GCATTGTTTTAATTGCATTAAATAAA-AATTCCCCTTTC-TTGGAATCTCTGATTCAAGT 1082594
Query 16513 ATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCA 16570
||||||||| ||||||| || | ||| |||| ||||| || || |||||||||
Sbjct 1082593 ATCTATTAGCAAACTAT--ATCTTTGAGTGAACATTCTTTATGAGAATTTGAAAACCA 1082538
>seq2
Length=46620681
Score = 102 bits (112), Expect = 8e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | || || || |||||| | | | || |||||| | |
Sbjct 41397925 TTTAAAAATCTGCATCCAAAGTGAAGACGTTATCTGTGGTTTCTGCCATAACGGCAAAAC 41397866
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 41397865 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTT 41397806
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 41397805 CCATAAAATCAAAGGGATTTTCTG 41397782
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/103 (79%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||||| ||||| | |||||| || || ||||| || |||||||||||||| ||| |||
Sbjct 41384706 ATCCCAGTTCCACAAGTAATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACAC 41384647
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149
||||||| || || | ||| || | ||||||||||||||
Sbjct 41384646 AGTTCATCCCAATGAGGCCAACTGGCAAGGCTTCTGTTAAAAA 41384604
>seq64
Length=9676502
Score = 89.7 bits (98), Expect = 5e-13
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318
|| || || || || | || || |||||||| || || ||||| ||||||||||| ||
Sbjct 6351545 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 6351486
Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378
| ||| ||||| | ||||| |||||||||||||| || || || || || ||||| ||
Sbjct 6351485 AGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGGCT 6351426
Query 16379 AC 16380
||
Sbjct 6351425 AC 6351424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462439830783800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |