Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq3 1333 0.0
seq35 140 2e-28
>seq3
Length=41493964
Score = 1333 bits (1478), Expect = 0.0
Identities = 1283/1649 (78%), Gaps = 60/1649 (4%)
Strand=Plus/Plus
Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195
||| || |||||| | | | |||||||||||| | | |||||| || ||| ||| |||
Sbjct 20628514 AGGCTCCTAGGCATGTGTGTAATGAGGATATTTGACCAGAGAAGAAATATATTTTTGCCA 20628573
Query 107196 TCACTCTGGAGTTGAACTTGA--------------TGTTCTGGATTAGTTTGTAATTAAA 107241
||| | |||||||| |||||| ||||| |||| ||| ||||| |
Sbjct 20628574 TCAGTTTGGAGTTGCACTTGACATTGCTGGGAACATGTTCATGATTCATTTATAATTGGA 20628633
Query 107242 GGCATTTTGTTCTGTCCAAGGAT--CTC-CTCCTCCACCTTGCC------TGTGCCCAAA 107292
| ||||||||| |||||||||| ||| ||||||||||| | ||| | ||||
Sbjct 20628634 GACATTTTGTTTTGTCCAAGGAGTCCTCTCTCCTCCACCTCCTCCTCCATTGTACACAAA 20628693
Query 107293 CTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352
|||| |||| ||||| |||| ||| | |||| ||| || | ||||
Sbjct 20628694 CTCTG----TCTCTCATCCTGTGAAAATGATTTCATGGAGGAAA---CTCTTCCGGCATT 20628746
Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412
|||| | |||||||| || | ||||||||||||||||||||| |||||||||||||
Sbjct 20628747 ATCACTTATGGGCCCTTGGTGGTTATATGCTGCTGGCCGTTGTTGCTCTGAGACTTTCTT 20628806
Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472
|||| || || |||||| ||||| |||| || || || || ||
Sbjct 20628807 TCAGATTGAAGTGTGAT---------------CTGGACTCCAAAGAATTTCAAAGCCAAT 20628851
Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532
|||||||||| | ||||||||| ||| ||||| ||||||| ||| |||||||||||||
Sbjct 20628852 ACTGTAGGGATAAGTTGTACAAGTCCCTAAAGCTCCCAGCAAGGAGGTCCATCAACTGTT 20628911
Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592
|||||||||| |||||||||| |||||||||| |||||||| | || | || |||||
Sbjct 20628912 CTGGGATCACCCGAGGGGACCGGGAAGCAGTGATCCAGGCCATTCTGAATAATCTGGAGA 20628971
Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652
| ||||| || ||| |||| ||| || | | ||||| | | |||||||||||||
Sbjct 20628972 TCAAGAAGAAACGGGAGCCTTTCAATGATATTGACTACCTTCGCCTGACCAGAGACTGTG 20629031
Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712
||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |||| |
Sbjct 20629032 AGCACTTTAAGGCTACAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGATT 20629091
Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772
|||| ||||| ||||| ||||| || |||||||||||||||||||||||| |||||||||
Sbjct 20629092 TCCCTATTGCATACTCTATGGTAGTTCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGC 20629151
Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832
| || ||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
Sbjct 20629152 GGGCTGTGTATGCCCCTCAGAATATATACTGTGTCCATGTGGATCAGAAGTCCCCAGAAA 20629211
Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892
| ||||||||||| || | || |||| ||| |||||||| |||||||| | |||||||
Sbjct 20629212 CGTTCAAAGAGGCAATCCATGCGATTACTTCATGCTTCCCAAATGTCTTTGTAGCCAGTA 20629271
Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952
|| |||| | ||||||||||||||| |||||||| || || |||||||||||||||||||
Sbjct 20629272 AGCTGGTTCGGGTGGTTTATGCCTCATGGTCCAGGGTTCAGGCTGACCTGAACTGTATGG 20629331
Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012
|||| |||||||||||| ||||||||||||| ||||| || |||||||| ||||||||||
Sbjct 20629332 AAGATTTGCTCCAGAGCCCAGTGCCATGGAAATACTTCCTAAATACATGTGGGACAGACT 20629391
Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072
| || |||||||||||||| |||||||||| |||||||||||||||||| || |||||||
Sbjct 20629392 TTCCTATAAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAATGGGAAGAACA 20629451
Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132
|||||||||| ||| ||||| |||||| ||||||| ||||||||||| | ||||| ||
Sbjct 20629452 GTATGGAGTCAGAGATACCTACTGAGTTTAAAAAAAGACGCTGGAAATATCACTATGTGG 20629511
Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192
||| ||||| | |||| || | ||| ||||| ||||||||| |||||||| |||
Sbjct 20629512 TGAAAGACATATTGTATATAACTAATGAGAAAAAGGATCCTCCCCCTAATAATTTAACCA 20629571
Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252
||||||| |||||||| ||| ||||||| ||| ||| ||| | || ||||||||| |
Sbjct 20629572 TGTTCACTGGGAATGCTTATATTGTGGCTTCTAGAGACTTCATTCAGCATGTCTTAACGA 20629631
Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312
|||||||||||||| |||| | |||||||| ||||||||||||||||| || |||||||
Sbjct 20629632 ACCCTAAATCCCAACAACTGATCGAATGGGTAAAAGACACCTATAGCCCTGATGAACACC 20629691
Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372
||||||| ||||||||||| || | |||||||||||||||||||| ||| |||||
Sbjct 20629692 TCTGGGCTACCCTTCAGCGGGCCTCATGGATGCCTGGCTCTGTTCCCTTAAACCACAAGT 20629751
Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432
|| |||| || ||||||| | |||| |||||||| ||||||||||| || |||||||
Sbjct 20629752 ATGACATTTCTGACATGATTTCCATTGCCAGGCTAATCAAGTGGCAGGCACATGAGGGAG 20629811
Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492
|| ||| | |||||| |||||| ||| |||||||||||||| | | || | ||||| |
Sbjct 20629812 ATATCAATAAGGGGGCATCTTATGAACCTTGCTCTGGAATCCACCAGCGGACTATCTGTA 20629871
Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552
|||| || || ||||| ||| | ||||| || || ||||||||||| ||||| |||||||
Sbjct 20629872 TTTATGGTGCTGGGGATCTGCATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGT 20629931
Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612
||||||| | ||| || ||||| | || ||||| |||||||| || |||||| |||||
Sbjct 20629932 TTGACCCAAAGGTAGACGATAATGCTCTTCAGTGTTTAGAAGAATATCTACGTTTTAAGG 20629991
Query 108613 CCATCTATGGGACTGAACTTTGAGCTGCA------------CTGTGGGCCAGGGAC-TGT 108659
|||| |||||||| ||||| | || | || ||||| | | || || |||
Sbjct 20629992 CCATTTATGGGACGGAACTGTAAGATACACTGTTGTGCTACCTGTGAGGCTGGAACATGT 20630051
Query 108660 GCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCC 108719
|| |||||| | | |||| || || ||||||| | | |||||| ||||||
Sbjct 20630052 GCAAACATG--CTATAATTGCTGGGACAATGAAGGGTGGGAGTCCAGGGCTTGGGAATCT 20630109
Query 108720 ATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748
|||||||||| ||| | || || || ||
Sbjct 20630110 ATGGCATCCCTTAGGATAAGGGGACTACT 20630138
>seq35
Length=13537455
Score = 140 bits (154), Expect = 2e-28
Identities = 578/890 (65%), Gaps = 35/890 (4%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| | |||||| ||||| ||||| || ||||| ||| | ||
Sbjct 11996665 CCTCTTAGTAAAGAAGAGGAAAGCTTCCCAATTGCATACTCCATAGTGGTTCATCACAAA 11996724
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| |
Sbjct 11996725 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 11996784
Query 107808 CACGTGGATGTGAAGTCCCCAGA-GACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864
|| || || || | |||| |||| || | || ||||| | || ||| |||
Sbjct 11996785 CATGTAGACAAAAAAT---CAGAGGACTCCTTTATAGCAGCGGTAATGGGCATCGCATCC 11996841
Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924
|| ||| || ||||| |||||||| |||||| || |||||||| ||||||
Sbjct 11996842 TGTTTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAATGTAGTTTATGCATCCTGGAGT 11996901
Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982
| || || || || || ||||| ||| | ||| | || |||| | ||||||| ||||
Sbjct 11996902 CGGGTTCAGGCCGATCTCAACTGCATGAAGGACCT-CTACAGA-ATGAGTGCCAATTGGA 11996959
Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
||||||| | ||| || ||| ||| || || || || ||||| || || |||
Sbjct 11996960 AGTACTTGATCAATCTTTGTGGGTTAGATTTTCCTATTAAAACCAACCTGGAAATTGTCA 11997019
Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099
| |||||| ||| | |||| | |||| |||| | | || | || ||| |
Sbjct 11997020 GGAAGCTCAAGTCGTTCATGGGTGAAAACAACCTGGAAACGGAAAAGATGCCATCTAA-- 11997077
Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159
||| || | | ||||| | | ||| ||| | | | || ||| |
Sbjct 11997078 -TAAAGAAGAAAGGTGGAAGAAGCATCATGTGGTCATTAATGGAAAGTTGACTAATACGG 11997136
Query 108160 AGA-TG---AAGG--ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213
|| || |||| | ||| || || | || ||| |||| | || | ||||||||
Sbjct 11997137 GGACTGTCAAAGGGCATCCT-CCACTCAAAA--CACCTTTGTTTTCGGGCAGTGCCTATT 11997193
Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTG 108272
|||||| | | | | | || |||| |||| || || || | ||| |
Sbjct 11997194 TTGTGGTCAGTAGGGAGTACGTGAGGTATGTGCTAGAGAATGAAAACATTCACAAG-TTC 11997252
Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332
| || |||| ||||||| || ||||| || || | ||||||||||| ||||| |
Sbjct 11997253 ATGGAGTGGGCACAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG- 11997311
Query 108333 GCTCCGTG-GATGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACAT 108388
| ||| || | | || ||||| | |||| ||||| ||||||| || | || |||||
Sbjct 11997312 GATCCCTGAGGTCCCAGGCTCACTGTCCTTAAGCCA---CAAGTATGACTTGTCTGACAT 11997368
Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448
| || | |||||| | ||||||||||||||| || || || | | ||| ||
Sbjct 11997369 GCAGTCCGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTGCCCAGGGTGC 11997428
Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508
| ||| |||||||| || ||||| | | | | || ||| ||| || || ||
Sbjct 11997429 ACTTTACCCACCCTGCAACGGGGTCCATGTGCGCTCAGTGTGTGTTTTCGGAGCTGGCGA 11997488
Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558
| || ||||||| || | || || ||| | || || || ||||||||||
Sbjct 11997489 CTTGAACTGGATACTACGTAAGCACCACTTTTTTGCCAATAAGTTTGACC 11997538
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 348215815581942
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