Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq3 1333 0.0 seq35 140 2e-28 >seq3 Length=41493964 Score = 1333 bits (1478), Expect = 0.0 Identities = 1283/1649 (78%), Gaps = 60/1649 (4%) Strand=Plus/Plus Query 107136 AGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCA 107195 ||| || |||||| | | | |||||||||||| | | |||||| || ||| ||| ||| Sbjct 20628514 AGGCTCCTAGGCATGTGTGTAATGAGGATATTTGACCAGAGAAGAAATATATTTTTGCCA 20628573 Query 107196 TCACTCTGGAGTTGAACTTGA--------------TGTTCTGGATTAGTTTGTAATTAAA 107241 ||| | |||||||| |||||| ||||| |||| ||| ||||| | Sbjct 20628574 TCAGTTTGGAGTTGCACTTGACATTGCTGGGAACATGTTCATGATTCATTTATAATTGGA 20628633 Query 107242 GGCATTTTGTTCTGTCCAAGGAT--CTC-CTCCTCCACCTTGCC------TGTGCCCAAA 107292 | ||||||||| |||||||||| ||| ||||||||||| | ||| | |||| Sbjct 20628634 GACATTTTGTTTTGTCCAAGGAGTCCTCTCTCCTCCACCTCCTCCTCCATTGTACACAAA 20628693 Query 107293 CTCTCCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGAC 107352 |||| |||| ||||| |||| ||| | |||| ||| || | |||| Sbjct 20628694 CTCTG----TCTCTCATCCTGTGAAAATGATTTCATGGAGGAAA---CTCTTCCGGCATT 20628746 Query 107353 ATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCC 107412 |||| | |||||||| || | ||||||||||||||||||||| ||||||||||||| Sbjct 20628747 ATCACTTATGGGCCCTTGGTGGTTATATGCTGCTGGCCGTTGTTGCTCTGAGACTTTCTT 20628806 Query 107413 TCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGC 107472 |||| || || |||||| ||||| |||| || || || || || Sbjct 20628807 TCAGATTGAAGTGTGAT---------------CTGGACTCCAAAGAATTTCAAAGCCAAT 20628851 Query 107473 ACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTT 107532 |||||||||| | ||||||||| ||| ||||| ||||||| ||| ||||||||||||| Sbjct 20628852 ACTGTAGGGATAAGTTGTACAAGTCCCTAAAGCTCCCAGCAAGGAGGTCCATCAACTGTT 20628911 Query 107533 CTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAG 107592 |||||||||| |||||||||| |||||||||| |||||||| | || | || ||||| Sbjct 20628912 CTGGGATCACCCGAGGGGACCGGGAAGCAGTGATCCAGGCCATTCTGAATAATCTGGAGA 20628971 Query 107593 TGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTG 107652 | ||||| || ||| |||| ||| || | | ||||| | | ||||||||||||| Sbjct 20628972 TCAAGAAGAAACGGGAGCCTTTCAATGATATTGACTACCTTCGCCTGACCAGAGACTGTG 20629031 Query 107653 AGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACT 107712 ||| ||| ||||| ||||||||||||||||||||||||||| ||||||||| |||| | Sbjct 20629032 AGCACTTTAAGGCTACAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTTAGATT 20629091 Query 107713 TCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGC 107772 |||| ||||| ||||| ||||| || |||||||||||||||||||||||| ||||||||| Sbjct 20629092 TCCCTATTGCATACTCTATGGTAGTTCATGAGAAGATTGAAAACTTTGAAAGGCTGCTGC 20629151 Query 107773 GAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGA 107832 | || ||||||||||||||||| |||||||||||||| |||||| |||||||||||| | Sbjct 20629152 GGGCTGTGTATGCCCCTCAGAATATATACTGTGTCCATGTGGATCAGAAGTCCCCAGAAA 20629211 Query 107833 CTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTA 107892 | ||||||||||| || | || |||| ||| |||||||| |||||||| | ||||||| Sbjct 20629212 CGTTCAAAGAGGCAATCCATGCGATTACTTCATGCTTCCCAAATGTCTTTGTAGCCAGTA 20629271 Query 107893 AGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGG 107952 || |||| | ||||||||||||||| |||||||| || || ||||||||||||||||||| Sbjct 20629272 AGCTGGTTCGGGTGGTTTATGCCTCATGGTCCAGGGTTCAGGCTGACCTGAACTGTATGG 20629331 Query 107953 AAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACT 108012 |||| |||||||||||| ||||||||||||| ||||| || |||||||| |||||||||| Sbjct 20629332 AAGATTTGCTCCAGAGCCCAGTGCCATGGAAATACTTCCTAAATACATGTGGGACAGACT 20629391 Query 108013 TCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACA 108072 | || |||||||||||||| |||||||||| |||||||||||||||||| || ||||||| Sbjct 20629392 TTCCTATAAAGACCAATGCTGAGATGGTCCAGGCCCTCAAGATGTTGAATGGGAAGAACA 20629451 Query 108073 GTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG 108132 |||||||||| ||| ||||| |||||| ||||||| ||||||||||| | ||||| || Sbjct 20629452 GTATGGAGTCAGAGATACCTACTGAGTTTAAAAAAAGACGCTGGAAATATCACTATGTGG 20629511 Query 108133 TGACAGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCA 108192 ||| ||||| | |||| || | ||| ||||| ||||||||| |||||||| ||| Sbjct 20629512 TGAAAGACATATTGTATATAACTAATGAGAAAAAGGATCCTCCCCCTAATAATTTAACCA 20629571 Query 108193 TGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACA 108252 ||||||| |||||||| ||| ||||||| ||| ||| ||| | || ||||||||| | Sbjct 20629572 TGTTCACTGGGAATGCTTATATTGTGGCTTCTAGAGACTTCATTCAGCATGTCTTAACGA 20629631 Query 108253 ACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACC 108312 |||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||| Sbjct 20629632 ACCCTAAATCCCAACAACTGATCGAATGGGTAAAAGACACCTATAGCCCTGATGAACACC 20629691 Query 108313 TCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGT 108372 ||||||| ||||||||||| || | |||||||||||||||||||| ||| ||||| Sbjct 20629692 TCTGGGCTACCCTTCAGCGGGCCTCATGGATGCCTGGCTCTGTTCCCTTAAACCACAAGT 20629751 Query 108373 ATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAG 108432 || |||| || ||||||| | |||| |||||||| ||||||||||| || ||||||| Sbjct 20629752 ATGACATTTCTGACATGATTTCCATTGCCAGGCTAATCAAGTGGCAGGCACATGAGGGAG 20629811 Query 108433 ATGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCA 108492 || ||| | |||||| |||||| ||| |||||||||||||| | | || | ||||| | Sbjct 20629812 ATATCAATAAGGGGGCATCTTATGAACCTTGCTCTGGAATCCACCAGCGGACTATCTGTA 20629871 Query 108493 TTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGT 108552 |||| || || ||||| ||| | ||||| || || ||||||||||| ||||| ||||||| Sbjct 20629872 TTTATGGTGCTGGGGATCTGCATTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGT 20629931 Query 108553 TTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGG 108612 ||||||| | ||| || ||||| | || ||||| |||||||| || |||||| ||||| Sbjct 20629932 TTGACCCAAAGGTAGACGATAATGCTCTTCAGTGTTTAGAAGAATATCTACGTTTTAAGG 20629991 Query 108613 CCATCTATGGGACTGAACTTTGAGCTGCA------------CTGTGGGCCAGGGAC-TGT 108659 |||| |||||||| ||||| | || | || ||||| | | || || ||| Sbjct 20629992 CCATTTATGGGACGGAACTGTAAGATACACTGTTGTGCTACCTGTGAGGCTGGAACATGT 20630051 Query 108660 GCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCC 108719 || |||||| | | |||| || || ||||||| | | |||||| |||||| Sbjct 20630052 GCAAACATG--CTATAATTGCTGGGACAATGAAGGGTGGGAGTCCAGGGCTTGGGAATCT 20630109 Query 108720 ATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||| ||| | || || || || Sbjct 20630110 ATGGCATCCCTTAGGATAAGGGGACTACT 20630138 >seq35 Length=13537455 Score = 140 bits (154), Expect = 2e-28 Identities = 578/890 (65%), Gaps = 35/890 (4%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| | |||||| ||||| ||||| || ||||| ||| | || Sbjct 11996665 CCTCTTAGTAAAGAAGAGGAAAGCTTCCCAATTGCATACTCCATAGTGGTTCATCACAAA 11996724 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| | Sbjct 11996725 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 11996784 Query 107808 CACGTGGATGTGAAGTCCCCAGA-GACT--TTCAAAGAGGCGGTCAAGGCCATTATTTCC 107864 || || || || | |||| |||| || | || ||||| | || ||| ||| Sbjct 11996785 CATGTAGACAAAAAAT---CAGAGGACTCCTTTATAGCAGCGGTAATGGGCATCGCATCC 11996841 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| || ||||| |||||||| |||||| || |||||||| |||||| Sbjct 11996842 TGTTTCAGTAACGTCTTTGTGGCCAGTCAGTTGGAGAATGTAGTTTATGCATCCTGGAGT 11996901 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || || || || ||||| ||| | ||| | || |||| | ||||||| |||| Sbjct 11996902 CGGGTTCAGGCCGATCTCAACTGCATGAAGGACCT-CTACAGA-ATGAGTGCCAATTGGA 11996959 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || ||| ||| || || || || ||||| || || ||| Sbjct 11996960 AGTACTTGATCAATCTTTGTGGGTTAGATTTTCCTATTAAAACCAACCTGGAAATTGTCA 11997019 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG---AGGTACCTTCTGAGT 108099 | |||||| ||| | |||| | |||| |||| | | || | || ||| | Sbjct 11997020 GGAAGCTCAAGTCGTTCATGGGTGAAAACAACCTGGAAACGGAAAAGATGCCATCTAA-- 11997077 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCA 108159 ||| || | | ||||| | | ||| ||| | | | || ||| | Sbjct 11997078 -TAAAGAAGAAAGGTGGAAGAAGCATCATGTGGTCATTAATGGAAAGTTGACTAATACGG 11997136 Query 108160 AGA-TG---AAGG--ACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATT 108213 || || |||| | ||| || || | || ||| |||| | || | |||||||| Sbjct 11997137 GGACTGTCAAAGGGCATCCT-CCACTCAAAA--CACCTTTGTTTTCGGGCAGTGCCTATT 11997193 Query 108214 TTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTG 108272 |||||| | | | | | || |||| |||| || || || | ||| | Sbjct 11997194 TTGTGGTCAGTAGGGAGTACGTGAGGTATGTGCTAGAGAATGAAAACATTCACAAG-TTC 11997252 Query 108273 GTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGT 108332 | || |||| ||||||| || ||||| || || | ||||||||||| ||||| | Sbjct 11997253 ATGGAGTGGGCACAAGACACGTACAGCCCAGATGAGTATCTCTGGGCCACTATTCAGAG- 11997311 Query 108333 GCTCCGTG-GATGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACAT 108388 | ||| || | | || ||||| | |||| ||||| ||||||| || | || ||||| Sbjct 11997312 GATCCCTGAGGTCCCAGGCTCACTGTCCTTAAGCCA---CAAGTATGACTTGTCTGACAT 11997368 Query 108389 GACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGC 108448 | || | |||||| | ||||||||||||||| || || || | | ||| || Sbjct 11997369 GCAGTCCGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGACATTGCCCAGGGTGC 11997428 Query 108449 GCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGA 108508 | ||| |||||||| || ||||| | | | | || ||| ||| || || || Sbjct 11997429 ACTTTACCCACCCTGCAACGGGGTCCATGTGCGCTCAGTGTGTGTTTTCGGAGCTGGCGA 11997488 Query 108509 CCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 | || ||||||| || | || || ||| | || || || |||||||||| Sbjct 11997489 CTTGAACTGGATACTACGTAAGCACCACTTTTTTGCCAATAAGTTTGACC 11997538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348215815581942