Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_002686.2
Length=124784
Score E
Sequences producing significant alignments: (Bits) Value
seq394 109 4e-19
seq82 95.1 1e-14
>seq394
Length=841001
Score = 109 bits (120), Expect = 4e-19
Identities = 359/549 (65%), Gaps = 7/549 (1%)
Strand=Plus/Minus
Query 20230 CCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAAT 20289
|| || ||||| || || |||||||||||| | || || | | || | || ||
Sbjct 665734 CCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAGGTGTGGATTCAGAT 665675
Query 20290 TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCA 20349
|||| || ||||||||||| || | ||||| || || || || ||||| |||||
Sbjct 665674 TATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATCAAAACCAACCCT 665615
Query 20350 AACGACAGAAGAATTATTTTATGCGCCTGGAAC-GCTAAAGATGTGCCTTTAATGGCTTT 20408
| | |||||||||||| | || | |||||| | |||||| | ||| | ||| |
Sbjct 665614 GAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCCTCTGATGCTGCT 665555
Query 20409 GCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAAT 20468
||||||||| ||| | || ||||| || ||| | ||| || |||| || ||
Sbjct 665554 GCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAAT-GGGAGCTGTCCTGCTGGAT 665496
Query 20469 GTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCT 20528
||| || | || | | ||||| |||| | ||||||| |||| || ||||| ||
Sbjct 665495 GTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGACAGCTATGCCCT 665436
Query 20529 GCTTA-CGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCA 20587
||||| | || ||| |||| || | | || | | | || ||||| | || |
Sbjct 665435 GCTTACCTTACATGGTTGCGCACATCAGGGACCTGCAGCCAGGGGACTTTATGCATTCTT 665376
Query 20588 TAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGAC 20647
| ||||| || | |||||| || ||||| || || | | ||| | ||| | | ||
Sbjct 665375 TGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATTCAGCTTCTATGAG 665316
Query 20648 AACCAAAACAATTCCCAACTCTTCGCATTAC-TCGAACTGTTAAAGATATTAACGATTTT 20706
|| ||| | ||||||| ||| | | | || || ||| | | ||| || | ||
Sbjct 665315 AAGCAAGAGCTTTCCCAA-AGTTCAAAATCCTTCCAAAGGTTGAGAAAATTGACAACTTC 665257
Query 20707 AAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT-AATTCAATTCCAATGGAAAT 20765
|||| | | | ||| | | ||||| || ||||| ||| | || ||| |||| | ||
Sbjct 665256 AAAGTTAACAACTTTCAGATTGAAGGGTAAAATCCACATCTAATC-ATTAAAATGCAGAT 665198
Query 20766 GTCTGTTTA 20774
| |||||||
Sbjct 665197 GGCTGTTTA 665189
>seq82
Length=8104705
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447
|||| | ||| | ||||| |||||||||| ||| || ||||| || ||||| | ||
Sbjct 34675 AGATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 34616
Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507
| || |||| || || |||| || | || | ||| ||||| ||||| || || ||
Sbjct 34615 TGGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTT 34556
Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549
||| || || || ||| | |||||||| || |||||||||||
Sbjct 34555 CAACATCGCCAGCTATTCCCTGCTTACCTACATGATTGCACA 34514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 399123269518435
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |