Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq394 109 4e-19 seq82 95.1 1e-14 >seq394 Length=841001 Score = 109 bits (120), Expect = 4e-19 Identities = 359/549 (65%), Gaps = 7/549 (1%) Strand=Plus/Minus Query 20230 CCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAAT 20289 || || ||||| || || |||||||||||| | || || | | || | || || Sbjct 665734 CCAGTTTATGGCTTCCAGTGGAGACATTTTTGGGCAAAACACAAAGGTGTGGATTCAGAT 665675 Query 20290 TATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCA 20349 |||| || ||||||||||| || | ||||| || || || || ||||| ||||| Sbjct 665674 TATTCTGATCAAGGAGTAGACCATCTGCAAAAAGTGATCAACACCATCAAAACCAACCCT 665615 Query 20350 AACGACAGAAGAATTATTTTATGCGCCTGGAAC-GCTAAAGATGTGCCTTTAATGGCTTT 20408 | | |||||||||||| | || | |||||| | |||||| | ||| | ||| | Sbjct 665614 GAAGCCAGAAGAATTATCATGTGTGTTTGGAACTCCAAAAGATTTTCCTCTGATGCTGCT 665555 Query 20409 GCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTGTCGTGTCAAAT 20468 ||||||||| ||| | || ||||| || ||| | ||| || |||| || || Sbjct 665554 GCCTCCATGCCATGTCCTCTGCCAGTTCTACAAGGTGAAT-GGGAGCTGTCCTGCTGGAT 665496 Query 20469 GTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCAAGTTATGCGCT 20528 ||| || | || | | ||||| |||| | ||||||| |||| || ||||| || Sbjct 665495 GTACCATAGGTCAGGAGTCATGGGCTTGGGCATACCTTTCAGCATTGACAGCTATGCCCT 665436 Query 20529 GCTTA-CGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTAGTCCACACCA 20587 ||||| | || ||| |||| || | | || | | | || ||||| | || | Sbjct 665435 GCTTACCTTACATGGTTGCGCACATCAGGGACCTGCAGCCAGGGGACTTTATGCATTCTT 665376 Query 20588 TAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAGTTAACACGAC 20647 | ||||| || | |||||| || ||||| || || | | ||| | ||| | | || Sbjct 665375 TGGGAGATGCACGTATTTAACTGAATCACATTGAGGCACTGAAAATTCAGCTTCTATGAG 665316 Query 20648 AACCAAAACAATTCCCAACTCTTCGCATTAC-TCGAACTGTTAAAGATATTAACGATTTT 20706 || ||| | ||||||| ||| | | | || || ||| | | ||| || | || Sbjct 665315 AAGCAAGAGCTTTCCCAA-AGTTCAAAATCCTTCCAAAGGTTGAGAAAATTGACAACTTC 665257 Query 20707 AAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCAT-AATTCAATTCCAATGGAAAT 20765 |||| | | | ||| | | ||||| || ||||| ||| | || ||| |||| | || Sbjct 665256 AAAGTTAACAACTTTCAGATTGAAGGGTAAAATCCACATCTAATC-ATTAAAATGCAGAT 665198 Query 20766 GTCTGTTTA 20774 | ||||||| Sbjct 665197 GGCTGTTTA 665189 >seq82 Length=8104705 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | ||| | ||||| |||||||||| ||| || ||||| || ||||| | || Sbjct 34675 AGATCTTCCTCTGATGGCACTGCCTCCATGCCATGCCCTCTGCCAGTTCTACGTGGTGAA 34616 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || |||| || | || | ||| ||||| ||||| || || || Sbjct 34615 TGGGGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGTGACATGGGCCTGGGCGTGCCCTT 34556 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACA 20549 ||| || || || ||| | |||||||| || ||||||||||| Sbjct 34555 CAACATCGCCAGCTATTCCCTGCTTACCTACATGATTGCACA 34514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399123269518435