Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq536 235 5e-57 seq260 167 2e-36 seq131 140 3e-28 seq59 134 1e-26 seq64 132 5e-26 seq58 131 2e-25 seq299 120 3e-22 seq11673 104 2e-17 seq3 100 3e-16 >seq536 Length=337149 Score = 235 bits (260), Expect = 5e-57 Identities = 597/900 (66%), Gaps = 40/900 (4%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914 ||||| ||| |||| || | |||| |||||| | || | || || || || |||||||| Sbjct 201732 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATTTT 201790 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | |||| || ||||||||||||||||| ||||| ||||| ||||| || Sbjct 201791 CTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCTC 201850 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| | |||||||||| | | || | || | | | || || | | | | Sbjct 201851 CATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCATAAG 201910 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||||| || | || ||||| || || ||| ||| |||||||| || ||||| || Sbjct 201911 CCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTT 201970 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154 |||| | | || | || || | ||||| | || | | | || | | Sbjct 201971 CTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT-T 202029 Query 14155 CGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212 | | || | || | || || | || ||||| | || | || ||||| Sbjct 202030 CTTT-TACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAG 202088 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||||| || | ||||||||||| ||||||||||| || |||||||| | || |||||| Sbjct 202089 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 202148 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 | ||||||||| || | ||| |||||||| |||| || Sbjct 202149 AGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCC 202186 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392 | |||||||| |||| | ||||||||| | | || | ||||| | ||| | | Sbjct 202187 ATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGC 202246 Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452 |||||| | ||| || || | | || |||||||||| | ||||| || | | | Sbjct 202247 AAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAAT 202304 Query 14453 TCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 ||| | ||||| ||| || ||| || || |||||||| | |||||||||||||| | Sbjct 202305 TCCCTTTCTTTGAAGTCTTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAAT 202362 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570 ||||||||||||| || || || || ||||| |||| | ||||||| ||| || | Sbjct 202363 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTT 202422 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 || | |||| || ||||||| || || ||||| | ||||| || ||| | || | Sbjct 202423 CTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAG 202482 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA- 14689 ||| |||| | ||||| ||||| || ||| | || || ||| | ||| || Sbjct 202483 CCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAAT 202539 Query 14690 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748 ||| | | |||| | || || ||| |||||||||| ||| ||||||| ||| |||| Sbjct 202540 GTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 202598 >seq260 Length=2306558 Score = 167 bits (184), Expect = 2e-36 Identities = 317/459 (69%), Gaps = 17/459 (4%) Strand=Plus/Plus Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245 || ||||| || || | || ||| | ||| || | | ||||||||||| ||||||||| Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325 Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305 || | |||| | || || ||||||||||| |||| || ||| | ||||||| | Sbjct 2180326 TCACTGGAAACT--TAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383 Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365 || || | | ||||| |||| || || || |||| |||| | | ||||| | Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443 Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCC-ATTCAGAtttttttttAATAAAATC 14424 | |||| ||||| | ||||| | | || || | | | |||||| || | | || Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATG-CAAGACCTAATTTGCTTTTTTCTTTACATAAGG 2180502 Query 14425 CATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTAT---GT 14481 |||||||||||| ||||| || | | |||| | ||||| ||||| | | || Sbjct 2180503 CATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-------GAAATCTTTTAAGT 2180555 Query 14482 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14541 |||||||| | |||||||||||| | |||| ||||| ||| || || || || |||| Sbjct 2180556 GTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATA 2180614 Query 14542 AAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATT 14601 ||||| | |||||| ||| || || | |||| || ||||||||||||| Sbjct 2180615 GAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATT 2180674 Query 14602 AACTATACCATCACTAGCTGCAAA-AAATGC-CAATATG 14638 ||||| |||||||| |||||||| |||| | |||||| Sbjct 2180675 TACTATGCCATCACTTGCTGCAAAGAAATTCATAATATG 2180713 >seq131 Length=5549739 Score = 140 bits (154), Expect = 3e-28 Identities = 238/344 (69%), Gaps = 1/344 (0%) Strand=Plus/Minus Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349 ||| ||||||| | || || || |||||||| ||||| || | | ||||| |||| Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192 Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14409 | ||||| | | || | ||||||| ||||| | ||||| || | ||| Sbjct 3233191 AACATGTTCTTGTAGGTA-GCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133 Query 14410 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACT 14469 | || | | || ||| ||||||||||||| | | | |||| | ||||||| | Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATC 3233073 Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529 | |||||| || |||||||| | || ||||||| ||| || |||||||| | || | Sbjct 3233072 TTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAAC 3233013 Query 14530 CTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGC 14589 ||| || ||||| ||||| | |||||| ||| || ||| | |||| ||| | Sbjct 3233012 CTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCAC 3232953 Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 |||||||||||| |||| |||||||| |||||||| || |||| Sbjct 3232952 CAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCA 3232909 >seq59 Length=10161055 Score = 134 bits (148), Expect = 1e-26 Identities = 367/558 (66%), Gaps = 13/558 (2%) Strand=Plus/Minus Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266 ||||| ||| | || | ||||| ||||| || |||||||| || |||||||| | || Sbjct 9902968 GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCA 9902909 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 ||||||| | || | | | ||||||||||| || ||||| || |||||||| ||| Sbjct 9902908 GGCATCAGTTCT-----TATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATT 9902854 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386 | | | || || ||| | |||| || | | |||| ||||| | || Sbjct 9902853 TCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTC 9902794 Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446 || || || || | ||| || || | || ||| ||||||| ||| | | Sbjct 9902793 CAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAG 9902734 Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | | |||| | |||| | | || |||||| | |||||||| | | ||| |||||| Sbjct 9902733 AGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCA 9902674 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || ||||||||||||||||| | || || ||| | ||||| | |||||| ||| Sbjct 9902673 GAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGA 9902614 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 |||||| | ||||| | ||| ||||||| | |||| ||||||| ||| |||| Sbjct 9902613 ACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAG 9902554 Query 14627 AATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGG 14684 || || || |||| | ||||| ||| || ||| | || | || | | Sbjct 9902553 AAAGCTAGAACATGTGAT--ATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGT--G 9902498 Query 14685 CTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742 || | ||||| |||||||| || || || ||||||| || || | ||||| || Sbjct 9902497 CTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTT 9902438 Query 14743 ATACATTACCCATATTTC 14760 ||||||| ||| || || Sbjct 9902437 ATACATTTGCCAAATATC 9902420 >seq64 Length=9676502 Score = 132 bits (146), Expect = 5e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||||| ||| || || || |||||||| |||||||| || |||||||| | Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 14346 CTATTAATCGTTCTCC 14361 ||| | |||||||| Sbjct 6351427 CTACAACACGTTCTCC 6351412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 6349672 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6349613 Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 6349612 GAAGCCATAGAAACAGCGGGCTTCTG 6349587 >seq58 Length=10378366 Score = 131 bits (144), Expect = 2e-25 Identities = 538/832 (65%), Gaps = 56/832 (7%) Strand=Plus/Plus Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963 || || || || ||||| ||| ||||| || |||||||||||||| || ||||||||| Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572 Query 13964 GATATATTTTCCATAAAATCAAATGGA-TTTGTTGACATAAACACTTTATCACAACCTAG 14022 || ||||| ||||||| |||| |||| ||| | | ||| || || | | || || Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGAT-AGAGCCCAG 1968631 Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082 || | | | || || || | || ||||| | || ||| ||| || ||||| Sbjct 1968632 TTTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCAT 1968691 Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142 || || || || ||||| | ||||| | || || | |||||| | | | Sbjct 1968692 CCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTAT---CCTAACAAA 1968748 Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202 || ||||| | | || | | | | || | | | | ||| || ||| | Sbjct 1968749 ATTGATAATTACTTTTATCCTCTTCTCCCA--CAGTGTGTAGCAAGTATTTGAACATTGA 1968806 Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 || ||||||||| ||||||||| ||||||||||| || |||||||| | Sbjct 1968807 GCAGGCAAAATCA-----------CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 1968855 Query 14263 TCCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCGAATGATCCGGAAAAG 14320 || ||||||| | || ||| || | | || |||||| || || || || |||||| Sbjct 1968856 ACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAG 1968915 Query 14321 AATATTCCCTCAACTGCAGCAAACGCTA-TTAATCGTTCTCCA-AACGATGCTTTTTTGT 14378 || ||| | || || |||||| |||| | || | |||||| || | ||||| Sbjct 1968916 AAGATTTCTTCCACATTAGCAAAGGCTACATCAT-GCTCTCCACAAATAGACTTTT---- 1968970 Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438 ||||| || || | || | ||| || || | | || ||| ||||| | Sbjct 1968971 ----TATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGC 1969022 Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498 |||| || | | ||| || ||||| | | || | |||| ||||||| || || | Sbjct 1969023 CATTGAAGATAAATTCTTTTTCTTTGGAATTT----TTAATGTGACAATAAGGAAACTGT 1969078 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 | ||| |||| ||||| ||| | || || || || || ||||| ||||| ||||||| Sbjct 1969079 ATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTG 1969138 Query 14559 ACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||| | || || |||| | ||| |||| ||||||| | ||| ||||||| Sbjct 1969139 TAATTTGAATTTCTTGGCTAAATTGCTTC-ACCAATTTTTCATGTATTATGCCATCAC-- 1969195 Query 14618 GCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675 |||| |||| ||| || |||| | ||||| | | ||| ||| | || || Sbjct 1969196 -CTGCTAAAA--GCCAGAACATGTGCT--ATAAAATCTCTCTCCTCAAGCTTCAGGGCTT 1969250 Query 14676 TCCAATCGGCTAAA---TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724 |||| || | || |||| | ||||||||||||| | |||||||||||| Sbjct 1969251 CCCAA--GGTTGAATGTTCCTGA-AAAGATCTACTTCCTTAACTGTCCAAAA 1969299 >seq299 Length=1791600 Score = 120 bits (132), Expect = 3e-22 Identities = 286/425 (67%), Gaps = 12/425 (3%) Strand=Plus/Minus Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||| |||| |||||||| || ||||| ||||| | || || |||||| Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 14034 ||||||||||| |||||| || | ||| || || | | || || ||||| | ||||| Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCATAAGTAA 1083310 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || || || |||||||| || ||| ||| |||| ||||| | || || Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250 Query 14095 TACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153 || || || | | | |||||||| || | || || |||| | || | ||| | Sbjct 1083249 AACTGGCAAGTCT-TCTGTTAAAAACTCCTGCTCAATTTTGACAG---CATTAACAATGA 1083194 Query 14154 TCGTAATAA----TTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209 || | | |||| | |||| || | || | | ||| | || || ||| Sbjct 1083193 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCA 1083134 Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269 || ||| | |||| | |||||||| | || || || || |||||||| | ||| || Sbjct 1083133 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGG 1083074 Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329 || |||| || |||||||| || || | ||| || ||||| | ||||| ||||| Sbjct 1083073 ATGGGACCTCTCTTCTTTAACCAGAAAATAGTAGC-AAAGATCCTCAGAAGAAAATTCCT 1083015 Query 14330 TCAAC 14334 || || Sbjct 1083014 TCCAC 1083010 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/217 (69%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299 ||||| || || |||||||| | ||| || || |||| || |||||||| || || Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777 Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359 ||||| || ||||| || ||||| ||||| || || | | | || | | || ||| Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTCC 1082717 Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt-ttAAT 14418 ||||| | | ||| | | ||||||| ||||| || | ||||||| |||| Sbjct 1082716 CCAAAAGTAGACTTTCTATCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAAC 1082657 Query 14419 AAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 | |||||||| ||| |||||||||||| |||| Sbjct 1082656 GTATGGCATTGTTTTAATTGCATTAAATAAAAATTCC 1082620 >seq11673 Length=1157 Score = 104 bits (114), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914 ||||| ||| |||| || | |||| |||||| | | | || || || || ||||| | Sbjct 222 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTCGGATTTGACATCACTCCCATCCT 280 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| || Sbjct 281 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 340 Query 13975 CATAAAATCAAATGGATTT 13993 |||||| |||||||||||| Sbjct 341 CATAAAGTCAAATGGATTT 359 >seq3 Length=41493964 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 11647 AACATTT-AACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACT 11705 |||| || |||||||| || | |||||| | |||| |||| | || || | | Sbjct 8287227 AACACTTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATT 8287286 Query 11706 CGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATG 11765 ||||| ||| |||| | | ||| | | ||||||| ||||| || | ||| ||||| Sbjct 8287287 CGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATA 8287346 Query 11766 TTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAA 11825 || || ||||||||||||||||| || || |||||| ||||||| || | | | Sbjct 8287347 TTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCC 8287406 Query 11826 AGACCAGACCTTGGCGCTATTCGTCCATAACA 11857 || ||||| | ||| ||||||| |||||| || Sbjct 8287407 AGGCCAGAACGTGGAGCTATTCTTCCATAGCA 8287438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482270335998440