Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq536 235 5e-57
seq260 167 2e-36
seq131 140 3e-28
seq59 134 1e-26
seq64 132 5e-26
seq58 131 2e-25
seq299 120 3e-22
seq11673 104 2e-17
seq3 100 3e-16
>seq536
Length=337149
Score = 235 bits (260), Expect = 5e-57
Identities = 597/900 (66%), Gaps = 40/900 (4%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914
||||| ||| |||| || | |||| |||||| | || | || || || || ||||||||
Sbjct 201732 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTTGGATTCGACATCACTCCCATTTT 201790
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | |||| || ||||||||||||||||| ||||| ||||| ||||| ||
Sbjct 201791 CTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAATATTCTC 201850
Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034
|||||| | |||||||||| | | || | || | | | || || | | | |
Sbjct 201851 CATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCAGCATAAG 201910
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
||||| || | || ||||| || || ||| ||| |||||||| || ||||| ||
Sbjct 201911 CCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCAATTAGCTT 201970
Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAAT 14154
|||| | | || | || || | ||||| | || | | | || | |
Sbjct 201971 CTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATAATTGTT-T 202029
Query 14155 CGTAATAATTTCA--TTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212
| | || | || | || || | || ||||| | || | || |||||
Sbjct 202030 CTTT-TACTCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGCAGGCAAAG 202088
Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272
||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||
Sbjct 202089 TCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATC 202148
Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332
| ||||||||| || | ||| |||||||| |||| ||
Sbjct 202149 AGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGATTCTGTCC 202186
Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTT 14392
| |||||||| |||| | ||||||||| | | || | ||||| | ||| | |
Sbjct 202187 ATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAATCAAATGC 202246
Query 14393 CTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGT 14452
|||||| | ||| || || | | || |||||||||| | ||||| || | | |
Sbjct 202247 AAGGCCCATG--GCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGAAGAGAAAT 202304
Query 14453 TCCTTCTCTTT--AGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510
||| | ||||| ||| || ||| || || |||||||| | |||||||||||||| |
Sbjct 202305 TCCCTTTCTTTGAAGTCTTT--AATATAAGTGTCAATAAGAAGACTATACATTTCAGAAT 202362
Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570
||||||||||||| || || || || ||||| |||| | ||||||| ||| || |
Sbjct 202363 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTTGAACTT 202422
Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630
|| | |||| || ||||||| || || ||||| | ||||| || ||| | || |
Sbjct 202423 CTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAGAGAAAG 202482
Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA- 14689
||| |||| | ||||| ||||| || ||| | || || ||| | ||| ||
Sbjct 202483 CCAGAATGTGGAT-ATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAAT 202539
Query 14690 -TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACAT 14748
||| | | |||| | || || ||| |||||||||| ||| ||||||| ||| ||||
Sbjct 202540 GTCCCT-GGAAGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTACACAT 202598
>seq260
Length=2306558
Score = 167 bits (184), Expect = 2e-36
Identities = 317/459 (69%), Gaps = 17/459 (4%)
Strand=Plus/Plus
Query 14186 AGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGT 14245
|| ||||| || || | || ||| | ||| || | | ||||||||||| |||||||||
Sbjct 2180266 AGGTGTTTGAACATCAGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGT 2180325
Query 14246 TCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCG 14305
|| | |||| | || || ||||||||||| |||| || ||| | ||||||| |
Sbjct 2180326 TCACTGGAAACT--TAGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCA 2180383
Query 14306 AATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAAC 14365
|| || | | ||||| |||| || || || |||| |||| | | ||||| |
Sbjct 2180384 AAAGAAACATAGAAGAAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAG 2180443
Query 14366 GATGCTTTTTTGTTCGATATCCATTTTCTAGCCC-ATTCAGAtttttttttAATAAAATC 14424
| |||| ||||| | ||||| | | || || | | | |||||| || | | ||
Sbjct 2180444 GTAGCTTCTTTGTCCCCAATCCAATG-CAAGACCTAATTTGCTTTTTTCTTTACATAAGG 2180502
Query 14425 CATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTAT---GT 14481
|||||||||||| ||||| || | | |||| | ||||| ||||| | | ||
Sbjct 2180503 CATTGTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTT-------GAAATCTTTTAAGT 2180555
Query 14482 ATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA 14541
|||||||| | |||||||||||| | |||| ||||| ||| || || || || ||||
Sbjct 2180556 GTCAATAAGGAGACTATACATTTCACAATGTA-GTTTTTCATGGCAATTTGGAAGTCATA 2180614
Query 14542 AAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATT 14601
||||| | |||||| ||| || || | |||| || |||||||||||||
Sbjct 2180615 GAAACAGTGAACTTCTGTAATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATT 2180674
Query 14602 AACTATACCATCACTAGCTGCAAA-AAATGC-CAATATG 14638
||||| |||||||| |||||||| |||| | ||||||
Sbjct 2180675 TACTATGCCATCACTTGCTGCAAAGAAATTCATAATATG 2180713
>seq131
Length=5549739
Score = 140 bits (154), Expect = 3e-28
Identities = 238/344 (69%), Gaps = 1/344 (0%)
Strand=Plus/Minus
Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349
||| ||||||| | || || || |||||||| ||||| || | | ||||| ||||
Sbjct 3233251 CCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTAA 3233192
Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14409
| ||||| | | || | ||||||| ||||| | ||||| || | |||
Sbjct 3233191 AACATGTTCTTGTAGGTA-GCCTCTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTTT 3233133
Query 14410 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACT 14469
| || | | || ||| ||||||||||||| | | | |||| | ||||||| |
Sbjct 3233132 CCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAATC 3233073
Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529
| |||||| || |||||||| | || ||||||| ||| || |||||||| | || |
Sbjct 3233072 TTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAAC 3233013
Query 14530 CTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGC 14589
||| || ||||| ||||| | |||||| ||| || ||| | |||| ||| |
Sbjct 3233012 CTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCAC 3232953
Query 14590 CAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633
|||||||||||| |||| |||||||| |||||||| || ||||
Sbjct 3232952 CAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCA 3232909
>seq59
Length=10161055
Score = 134 bits (148), Expect = 1e-26
Identities = 367/558 (66%), Gaps = 13/558 (2%)
Strand=Plus/Minus
Query 14207 GCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCT 14266
||||| ||| | || | ||||| ||||| || |||||||| || |||||||| | ||
Sbjct 9902968 GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCA 9902909
Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326
||||||| | || | | | ||||||||||| || ||||| || |||||||| |||
Sbjct 9902908 GGCATCAGTTCT-----TATGAGCCAAAATATTGATGCAAATGAGCCAGAAAAGAAGATT 9902854
Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATC 14386
| | | || || ||| | |||| || | | |||| ||||| | ||
Sbjct 9902853 TCTCCCGTAGTGGCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCTTTGTCCCCAGTC 9902794
Query 14387 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAAT 14446
|| || || || | ||| || || | || ||| ||||||| ||| | |
Sbjct 9902793 CAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCAATGGCACTGGAG 9902734
Query 14447 AAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506
| | |||| | |||| | | || |||||| | |||||||| | | ||| ||||||
Sbjct 9902733 AGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGACCATATATTTCA 9902674
Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566
|| ||||||||||||||||| | || || ||| | ||||| | |||||| |||
Sbjct 9902673 GAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCTTCTATAATTTGA 9902614
Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626
|||||| | ||||| | ||| ||||||| | |||| ||||||| ||| ||||
Sbjct 9902613 ACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCACGTGCTTCAAAG 9902554
Query 14627 AATGC--CAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGG 14684
|| || || |||| | ||||| ||| || ||| | || | || | |
Sbjct 9902553 AAAGCTAGAACATGTGAT--ATAAAATATCATTCCTCAGGCTTCAGGGCCTGCCGGT--G 9902498
Query 14685 CTAA--ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTT 14742
|| | ||||| |||||||| || || || ||||||| || || | ||||| ||
Sbjct 9902497 CTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCGGCTTTCTT 9902438
Query 14743 ATACATTACCCATATTTC 14760
||||||| ||| || ||
Sbjct 9902437 ATACATTTGCCAAATATC 9902420
>seq64
Length=9676502
Score = 132 bits (146), Expect = 5e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285
|||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| |
Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488
Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345
| | ||| ||||||| ||| || || || |||||||| |||||||| || |||||||| |
Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428
Query 14346 CTATTAATCGTTCTCC 14361
||| | ||||||||
Sbjct 6351427 CTACAACACGTTCTCC 6351412
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| || |||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 6349672 AATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6349613
Query 14533 AAAACCATAAAAACATCTAGCTTCTG 14558
|| ||||| ||||| | |||||||
Sbjct 6349612 GAAGCCATAGAAACAGCGGGCTTCTG 6349587
>seq58
Length=10378366
Score = 131 bits (144), Expect = 2e-25
Identities = 538/832 (65%), Gaps = 56/832 (7%)
Strand=Plus/Plus
Query 13904 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13963
|| || || || ||||| ||| ||||| || |||||||||||||| || |||||||||
Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572
Query 13964 GATATATTTTCCATAAAATCAAATGGA-TTTGTTGACATAAACACTTTATCACAACCTAG 14022
|| ||||| ||||||| |||| |||| ||| | | ||| || || | | || ||
Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGAT-AGAGCCCAG 1968631
Query 14023 TTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCAT 14082
|| | | | || || || | || ||||| | || ||| ||| || |||||
Sbjct 1968632 TTTCAGCATAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCAT 1968691
Query 14083 ACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTC 14142
|| || || || ||||| | ||||| | || || | |||||| | | |
Sbjct 1968692 CCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTAT---CCTAACAAA 1968748
Query 14143 GTTTATAATAATCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 14202
|| ||||| | | || | | | | || | | | | ||| || ||| |
Sbjct 1968749 ATTGATAATTACTTTTATCCTCTTCTCCCA--CAGTGTGTAGCAAGTATTTGAACATTGA 1968806
Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262
|| ||||||||| ||||||||| ||||||||||| || |||||||| |
Sbjct 1968807 GCAGGCAAAATCA-----------CTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 1968855
Query 14263 TCCTGGCATCAATCCTCGtttttttAACC--AAAATATTGCAGCGAATGATCCGGAAAAG 14320
|| ||||||| | || ||| || | | || |||||| || || || || ||||||
Sbjct 1968856 ACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAG 1968915
Query 14321 AATATTCCCTCAACTGCAGCAAACGCTA-TTAATCGTTCTCCA-AACGATGCTTTTTTGT 14378
|| ||| | || || |||||| |||| | || | |||||| || | |||||
Sbjct 1968916 AAGATTTCTTCCACATTAGCAAAGGCTACATCAT-GCTCTCCACAAATAGACTTTT---- 1968970
Query 14379 TCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAG 14438
||||| || || | || | ||| || || | | || ||| ||||| |
Sbjct 1968971 ----TATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGC 1969022
Query 14439 CATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 14498
|||| || | | ||| || ||||| | | || | |||| ||||||| || || |
Sbjct 1969023 CATTGAAGATAAATTCTTTTTCTTTGGAATTT----TTAATGTGACAATAAGGAAACTGT 1969078
Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558
| ||| |||| ||||| ||| | || || || || || ||||| ||||| |||||||
Sbjct 1969079 ATATTACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTG 1969138
Query 14559 ACCATTGTACCTC-TGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617
||| | || || |||| | ||| |||| ||||||| | ||| |||||||
Sbjct 1969139 TAATTTGAATTTCTTGGCTAAATTGCTTC-ACCAATTTTTCATGTATTATGCCATCAC-- 1969195
Query 14618 GCTGCAAAAAATGCC--AATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675
|||| |||| ||| || |||| | ||||| | | ||| ||| | || ||
Sbjct 1969196 -CTGCTAAAA--GCCAGAACATGTGCT--ATAAAATCTCTCTCCTCAAGCTTCAGGGCTT 1969250
Query 14676 TCCAATCGGCTAAA---TCCTTAGAAAGATCTACTTCATCAACTGTCCAAAA 14724
|||| || | || |||| | ||||||||||||| | ||||||||||||
Sbjct 1969251 CCCAA--GGTTGAATGTTCCTGA-AAAGATCTACTTCCTTAACTGTCCAAAA 1969299
>seq299
Length=1791600
Score = 120 bits (132), Expect = 3e-22
Identities = 286/425 (67%), Gaps = 12/425 (3%)
Strand=Plus/Minus
Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975
||||| || |||| |||| |||||||| || ||||| ||||| | || || ||||||
Sbjct 1083428 TGATACTCTGAAACTTTTTTCTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCC 1083369
Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATAGTAA 14034
||||||||||| |||||| || | ||| || || | | || || ||||| | |||||
Sbjct 1083368 ATAAAATCAAAGGGATTTTCTGCCTGAAAAACCTT-TGAGAATCCAAGTTCCATAAGTAA 1083310
Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094
||| || || || || |||||||| || ||| ||| |||| ||||| | || ||
Sbjct 1083309 TCTTTCAGCTATAAATTCAATATACTGGCTCATCAAAACACAGTTCATCCTAATGAGGCC 1083250
Query 14095 TACAGG-AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 14153
|| || || | | | |||||||| || | || || |||| | || | ||| |
Sbjct 1083249 AACTGGCAAGTCT-TCTGTTAAAAACTCCTGCTCAATTTTGACAG---CATTAACAATGA 1083194
Query 14154 TCGTAATAA----TTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 14209
|| | | |||| | |||| || | || | | ||| | || || |||
Sbjct 1083193 TCTCCCTCACCCTTTTCTTCTGAAGTCTTATTTACTAAGTACTGAAACACTAGGCAAGCA 1083134
Query 14210 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 14269
|| ||| | |||| | |||||||| | || || || || |||||||| | ||| ||
Sbjct 1083133 AAGTCATAGAGAAGTTCTTCATCTCTGTTGATCAGCTCATTGGAAAATGTGAGTCCAGGG 1083074
Query 14270 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 14329
|| |||| || |||||||| || || | ||| || ||||| | ||||| |||||
Sbjct 1083073 ATGGGACCTCTCTTCTTTAACCAGAAAATAGTAGC-AAAGATCCTCAGAAGAAAATTCCT 1083015
Query 14330 TCAAC 14334
|| ||
Sbjct 1083014 TCCAC 1083010
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/217 (69%), Gaps = 1/217 (0%)
Strand=Plus/Minus
Query 14240 ATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATT 14299
||||| || || |||||||| | ||| || || |||| || |||||||| || ||
Sbjct 1082836 ATAAGCTCATTGGAAAATGTAAGTCCAGGGATGGGACCTCTCTTCTTTAACCAGAAAATA 1082777
Query 14300 GCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCT 14359
||||| || ||||| || ||||| ||||| || || | | | || | | || |||
Sbjct 1082776 GCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGAACTGATGGCCACCACTCTTTCC 1082717
Query 14360 CCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttttttt-ttAAT 14418
||||| | | ||| | | ||||||| ||||| || | ||||||| ||||
Sbjct 1082716 CCAAAAGTAGACTTTCTATCTACTATCCATCACAGGGCCCAGTCTGCTTTTTTTCTTAAC 1082657
Query 14419 AAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455
| |||||||| ||| |||||||||||| ||||
Sbjct 1082656 GTATGGCATTGTTTTAATTGCATTAAATAAAAATTCC 1082620
>seq11673
Length=1157
Score = 104 bits (114), Expect = 2e-17
Identities = 108/139 (78%), Gaps = 2/139 (1%)
Strand=Plus/Plus
Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTG-TTAGAAATAACGCCCATTTT 13914
||||| ||| |||| || | |||| |||||| | | | || || || || ||||| |
Sbjct 222 TAAAAGTCAGCATCCAAGGTAAAAGAATTATC-TGTCGGATTTGACATCACTCCCATCCT 280
Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974
||||| || | ||||| || |||||||||||||| || ||||| ||||| ||||| ||
Sbjct 281 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCTAGTGAAATATTCTC 340
Query 13975 CATAAAATCAAATGGATTT 13993
|||||| ||||||||||||
Sbjct 341 CATAAAGTCAAATGGATTT 359
>seq3
Length=41493964
Score = 100 bits (110), Expect = 3e-16
Identities = 150/212 (71%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 11647 AACATTT-AACTTCTTTAATTTTTGGATATTCTACTTTTTCAAAAATAATTTGCGCCACT 11705
|||| || |||||||| || | |||||| | |||| |||| | || || | |
Sbjct 8287227 AACACTTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATT 8287286
Query 11706 CGATCGCCTCTTTTAATATTAAATGTATTTTTACCATTATTAATAAATATAACTCCAATG 11765
||||| ||| |||| | | ||| | | ||||||| ||||| || | ||| |||||
Sbjct 8287287 CGATCACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATA 8287346
Query 11766 TTACCCCTATAATCTTCATCTATAACTCCTCCTCCTATATCTATGCCATAATATAACGAA 11825
|| || ||||||||||||||||| || || |||||| ||||||| || | | |
Sbjct 8287347 TTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCC 8287406
Query 11826 AGACCAGACCTTGGCGCTATTCGTCCATAACA 11857
|| ||||| | ||| ||||||| |||||| ||
Sbjct 8287407 AGGCCAGAACGTGGAGCTATTCTTCCATAGCA 8287438
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482270335998440
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