Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011-
11-29] 12,483 sequences; 2,478,393,770 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq30 116 3e-21
seq14 107 2e-18
seq126 104 2e-17
seq536 89.7 5e-13
seq64 86.0 6e-12
>seq30
Length=14751797
Score = 116 bits (128), Expect = 3e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| || || || ||||| ||||| || ||
Sbjct 830297 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTT 830356
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
|||| || ||||||||| || ||||| || ||||| ||||||||||||||||| ||
Sbjct 830357 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTA 830416
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 830417 CCTGTCTCTGTCTGAGACTCAATGATGGC 830445
>seq14
Length=21378024
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| ||
Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| |||||||| ||| | || || || |||
Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||| ||||| || ||||||||| |||| || ||| | ||||| |||
Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || || || || |||| ||| | ||| | || ||
Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957
>seq126
Length=5838822
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || || || ||||| |||| ||||| || |||||| |||| ||||| ||
Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|||| |||| | |||||| | ||| |||||||| ||| | || || || |||
Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857
Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372
|||||||||||||| || ||||||||| |||| || ||| | ||||| | |
Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917
Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
|| || ||||| || || || || |||| ||| | ||| | || ||
Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 680964
>seq536
Length=337149
Score = 89.7 bits (98), Expect = 5e-13
Identities = 267/402 (66%), Gaps = 14/402 (3%)
Strand=Plus/Minus
Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568
||||||||| || ||||| |||| | || ||||| ||||| || ||| | | |
Sbjct 202668 TGAACCACTACTGGGAGAGAGCCCCCACCGCTTGGTCATCTTTCCTATGGAACACCATGG 202609
Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628
|| || | |||| || || || || || || |||||||| | || || || | ||
Sbjct 202608 TATCCGGCAGATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGCTCT 202549
Query 57629 GTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAG--AGAA-ATTTTATTA 57684
|| | ||| | ||| | ||||| |||| || ||||| | || ||||||| |
Sbjct 202548 -TCCAGGGACATTCAGC-ACTGGGAAGCCCTGAAGC---CTGAGGAACAATATTTTAT-A 202495
Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744
||| | |||| || | || ||| ||| | || || || ||||||||||| ||
Sbjct 202494 TCCACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTGGTGGAGC 202435
Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804
|||| |||||||| ||| | || || || | | || || || || ||| | ||||
Sbjct 202434 CATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCCA 202375
Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864
| |||||| | ||||| ||||||||| || || || || || || | || ||| |
Sbjct 202374 TGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAAGACTTCA 202315
Query 57865 ACGAGAAACGTA--GACTGTTCAACGCGATCGAAACAATGCC 57904
| ||||| | | || ||||| || | |||||||||||
Sbjct 202314 A--AGAAAGGGAATTTCTCTTCAATGCCACTGAAACAATGCC 202275
>seq64
Length=9676502
Score = 86.0 bits (94), Expect = 6e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566
||||||||||| || |||||| ||||| | |||||||| ||||| || ||||| |
Sbjct 6348425 GATGAACCACTACTGAGAGAGAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCAT 6348484
Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623
||||| ||| | ||||| || || || || || || |||||||| | ||| || |||
Sbjct 6348485 GACATCTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGTA 6348541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445696843725360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |