Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq30 116 3e-21 seq14 107 2e-18 seq126 104 2e-17 seq536 89.7 5e-13 seq64 86.0 6e-12 >seq30 Length=14751797 Score = 116 bits (128), Expect = 3e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| || || || ||||| ||||| || || Sbjct 830297 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCACTTGATGGTT 830356 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| ||||||||||||||||| || Sbjct 830357 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAAGAATCTTTGTAGAGCATGTACGGGGTA 830416 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||| ||||| ||||| || Sbjct 830417 CCTGTCTCTGTCTGAGACTCAATGATGGC 830445 >seq14 Length=21378024 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || |||||| |||| ||||| || Sbjct 6329731 ATGCAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 6329790 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || || || ||| Sbjct 6329791 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 6329850 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| ||||| || ||||||||| |||| || ||| | ||||| ||| Sbjct 6329851 CAGCGTCTGATATTTGCGGGCAAACAGCTGGAGGATGGCCGCACTCTCTCAGATTACAAC 6329910 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | ||| | || || Sbjct 6329911 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 6329957 >seq126 Length=5838822 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| |||| ||||| || |||||| |||| ||||| || Sbjct 680738 ATGCAGATCTTTGTGAAGACCATGACGGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 680797 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| |||||||| ||| | || || || ||| Sbjct 680798 GACACCATCGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGATCAG 680857 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||||||||| || ||||||||| |||| || ||| | ||||| | | Sbjct 680858 CAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGGCCACACTCTCTCAGATTACAGC 680917 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| || || || || |||| ||| | ||| | || || Sbjct 680918 ATCCAGAAAGAGTCCACCCTGCACTTGGTGCTTCGCCTGCGAGGTGG 680964 >seq536 Length=337149 Score = 89.7 bits (98), Expect = 5e-13 Identities = 267/402 (66%), Gaps = 14/402 (3%) Strand=Plus/Minus Query 57509 TGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAGA 57568 ||||||||| || ||||| |||| | || ||||| ||||| || ||| | | | Sbjct 202668 TGAACCACTACTGGGAGAGAGCCCCCACCGCTTGGTCATCTTTCCTATGGAACACCATGG 202609 Query 57569 CATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCT 57628 || || | |||| || || || || || || |||||||| | || || || | || Sbjct 202608 TATCCGGCAGATGTGTAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGCTCT 202549 Query 57629 GTCTAAGGATCTG-AGCGATTGGGATTCCCTCAAAGAATCTGAG--AGAA-ATTTTATTA 57684 || | ||| | ||| | ||||| |||| || ||||| | || ||||||| | Sbjct 202548 -TCCAGGGACATTCAGC-ACTGGGAAGCCCTGAAGC---CTGAGGAACAATATTTTAT-A 202495 Query 57685 AACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAA 57744 ||| | |||| || | || ||| ||| | || || || ||||||||||| || Sbjct 202494 TCCACATTCTGGCTTTCTCTGCGGCAGGTGATAGCATAGTAAAGGAGAATTTGGTGGAGC 202435 Query 57745 GATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCA 57804 |||| |||||||| ||| | || || || | | || || || || ||| | |||| Sbjct 202434 CATTTAGCCAAGAAGTTCAAATTACAGAAGCCCGCAGTTTCTATGGCTTCCAAATTGCCA 202375 Query 57805 TTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACG 57864 | |||||| | ||||| ||||||||| || || || || || || | || ||| | Sbjct 202374 TGGAAAACATACATTCTGAAATGTATAGTCTTCTTATTGACACTTATATTAAAGACTTCA 202315 Query 57865 ACGAGAAACGTA--GACTGTTCAACGCGATCGAAACAATGCC 57904 | ||||| | | || ||||| || | ||||||||||| Sbjct 202314 A--AGAAAGGGAATTTCTCTTCAATGCCACTGAAACAATGCC 202275 >seq64 Length=9676502 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||||||||| || |||||| ||||| | |||||||| ||||| || ||||| | Sbjct 6348425 GATGAACCACTACTGAGAGAGAACCCCCGCCGCTTTGTCATCTTTCCTATCGAATACCAT 6348484 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||||| ||| | ||||| || || || || || || |||||||| | ||| || ||| Sbjct 6348485 GACATCTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCCGAGGAGGTA 6348541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445696843725360