Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ictidomys_20tridecemlineatus_20[refseq_20GCF_5F000236235.1_202011- 11-29] 12,483 sequences; 2,478,393,770 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq536 297 2e-75 seq59 199 5e-46 seq260 190 3e-43 seq131 178 2e-39 seq58 170 2e-37 seq3 120 4e-22 seq30 116 5e-21 seq64 111 2e-19 seq2 98.7 1e-15 seq77 95.1 2e-14 >seq536 Length=337149 Score = 297 bits (328), Expect = 2e-75 Identities = 634/943 (67%), Gaps = 38/943 (4%) Strand=Plus/Plus Query 33229 TGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTC 33285 |||| ||||||||||| |||| || | |||| ||| ||| | || ||||| |||| Sbjct 201724 TGTTCATTTAAAAGTCAGCATCCAAGGTAAAAGAATTATCTGTTGGATTCGACATCACTC 201783 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 ||||||| || || || || || | || || || || |||||||| ||||| | ||| | Sbjct 201784 CCATTTTCTGATACTCGCCTACTCCCTTCTCAAAGAAGTTAGTTTTCCCTTCTAGTGAAA 201843 Query 33346 TATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-TTCA 33404 |||| ||||| || | ||| ||||| || ||| |||| || ||||| |||| |||| Sbjct 201844 TATTCTCCATAAAGTTAAATGGATTTTCTACTTTGAAAATCTTGTTAAAGCCCAGCTTCA 201903 Query 33405 GAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCT 33464 | | | | |||||||| || ||||| || || ||||||| |||||||| || Sbjct 201904 GCA-TAAGCCTATCTGCCACAAATTCAATGTACTGCTTCATCAAAGTGCAATTCATCCCA 201962 Query 33465 ATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTT 33524 || || || | || | || | || || || || || || || | ||||| | Sbjct 201963 ATTAGCTTCTCAGGCAAGGCTTCTGTGAGGAACTCCTGATCTATCTTGAAGGCATTGATA 202022 Query 33525 ATAATAAATCTAACGGTTTCTTCACTC--GGTGGATGTAATAAATGTTTAAACATCAAAC 33582 || | | | || | ||| | || ||| || | | ||||| | ||||| | Sbjct 202023 ATTGTTTCTTTTAC--TCTCTGCTCTGATGGTTTGTGAAGCAGGTGTTTGAGCATCAGGC 202080 Query 33583 ATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTC 33642 | || || || ||||| | |||||| ||||| ||||| | ||| || ||||| ||||| | Sbjct 202081 AGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGC 202140 Query 33643 CGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGA 33702 | ||||| || || || || || ||||| |||||||||| Sbjct 202141 CAGGCATCAGTCCTCGTTTCTTGAGCCA----------------------GAAAAGAAGA 202178 Query 33703 TTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA 33759 ||| || | ||||||||||| | || | |||||||| | | | |||| | Sbjct 202179 TTCTGTCCATAGCAGCAAAGGCTACAACACGTTCTCCATAGGTAGCCTCTTTGTCCCCAA 202238 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 || | | ||||| ||| ||||| || ||||||||||| ||||| ||||||| | Sbjct 202239 TCAAATGCAAGGCCCAT--GGCTTTCTTCTTCACACAAGGCATTGTTTCAGTGGCATTGA 202296 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 ||||| | | |||| || ||||||| |||||| || || | |||||||||||||| Sbjct 202297 AGAGAAATTCCCTTTCTTTGAAGTCTTTAATATAAGTGTCAATAAGAAGACTATACATTT 202356 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | ||||| |||||||| ||||| || || || || ||||||| | || || ||||| | Sbjct 202357 CAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACTGCGGGCTTCTGTAATTT 202416 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | |||||| | |||| | || | ||||| || || ||||| | ||||| || ||| Sbjct 202417 GAACTTCTTGGCTAAATGGCTCCACCAAATTCTCCTTTACTATGCTATCACCTGCCGCAG 202476 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 | || |||| | || ||||||||||| ||| || || | || | ||| | | Sbjct 202477 AGAAAGCCAGAATGTG-GATATAAAATATTGTTCCTCAGGCTTCAGGGCTTCCCAGTGCT 202535 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 || || | || | | |||| || || |||||||||| || ||||| || || ||| Sbjct 202536 GAATGTCCCTGGA-AGAGCCACCTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTAC 202594 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 |||| | || ||| |||| | || || || || || || || Sbjct 202595 ACATCTGCCGGATACCATGGTGTTCCATAGGAAAGATGACCAA 202637 >seq59 Length=10161055 Score = 199 bits (220), Expect = 5e-46 Identities = 569/869 (65%), Gaps = 22/869 (3%) Strand=Plus/Minus Query 33277 ACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTT 33336 |||| |||||||| | || || || || || | || || |||||||| || |||| Sbjct 9903270 ACATCACTCCCATCCTCTGATACTCGCCTAC-----TATCAAAGAAATTAGTCTTCCCTT 9903216 Query 33337 CCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATC 33396 | |||| ||| |||| || |||| ||||| || || ||| || ||||| Sbjct 9903215 CTGATGAACCATTCCCCATAAAGACAAATGGATTTTCCACTCTGAAAACCTTCTTAAAGT 9903156 Query 33397 CCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAAT 33456 |||| || || | || ||||| |||||||| || | |||||| ||| | Sbjct 9903155 CCAACTCTAGCATGAGCCTGTCTGCCACGAATTCAATGAACTGCTTCATCCAAGTACAGT 9903096 Query 33457 TCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCG 33516 || | || ||||| || | || | ||| |||| || | || ||||| || || | Sbjct 9903095 TCCTCCCAATGAGCTTCATGGGCAAGGCCTCAGTGAGGAGCTCCTGTTCCATCCTGACAG 9903036 Query 33517 CATTTGTTATAATAAATCTAACGGTTTCTTCACTC--GGTGGATGTAATAAATGTTTAAA 33574 |||| || || || | || | ||| | || |||| |||| | | || | Sbjct 9903035 CATTGACGATTATTTATTTTAC--TCTCTGCTCTGATGGTGTGTGTAGCAGGTATTCGGA 9902978 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 |||| || || || || |||| | |||||||||||| || || | ||| || ||||| Sbjct 9902977 CATCGGGCA-GCAAATTCAGAGTGTAAACCCTCGTCTCTGCTGATAAGTTCATTGGAAAA 9902919 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 ||||| || ||||| || | || | ||||||||||| || || ||||| || || Sbjct 9902918 TGTGAGGCCAGGCATCAGTTC-----TTATGAGCCAAAATATTGATGCAAATGAGCCAGA 9902864 Query 33695 AAAGAAGATTCCTTC--TACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCG 33749 |||||||||| || | || || || ||| | | || | | || || | | | Sbjct 9902863 AAAGAAGATTTCTCCCGTAGTG--GCCAAGACTACAACACGTTTTCTGTAGGTAGCTTCT 9902806 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 |||| |||| || || || || ||||| || || ||||||||| |||| Sbjct 9902805 TTGTCCCCAGTCCAACACAAGGCACAGTCTGCTTTCTTCTTCACCCAAGGCATCATTTCA 9902746 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 |||||| | ||||| | | | || | || ||||| ||| | || || | ||| Sbjct 9902745 ATGGCACTGGAGAGAAATTCCCTGTCTTAGGAATTTTTAATGTAAATGTCAATAAGGAGA 9902686 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 | ||| ||||| ||||| |||||||| || || | || || || ||||||| | || Sbjct 9902685 CCATATATTTCAGAATGTATGTTTTCCATAGCAACTTGGAAGCCACAGAAACAGCCGGCT 9902626 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 || |||| || || ||| | |||||| | | | ||||||| | |||| |||||| Sbjct 9902625 TCTATAATTTGAACCTCTTGGCTAAATCGCTGCACCAGATTTTCACTTGCTATGCCATCA 9902566 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 | ||| |||| || || | |||||| |||||||||| ||| || || | || Sbjct 9902565 CGTGCTTCAAAGAAAGCTAGAACATGTGATATAAAATATCATTCCTCAGGCTTCAGGGCC 9902506 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | || | | | || || || | |||||| || ||| ||||||| || || ||||| Sbjct 9902505 TGCCGGTGCTGACTGTCCTTGGAAAGATCCACCTCCTCCGCTGTCCAGAAGGACGCCTCG 9902446 Query 34110 GCCTTTTTATACATATTCCAGATGTCATG 34138 || || |||||||| | ||| || ||||| Sbjct 9902445 GCTTTCTTATACATTTGCCAAATATCATG 9902417 >seq260 Length=2306558 Score = 190 bits (210), Expect = 3e-43 Identities = 619/947 (65%), Gaps = 22/947 (2%) Strand=Plus/Plus Query 33226 TTATGTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAA 33282 || |||| |||| |||||| |||| || | ||||| ||| || | || ||||| Sbjct 2179926 TTCTGTTCATTTAGAAGTCAGCATCCAAGGTAAAATAATTCCCTGTTGGATTTGACATCT 2179985 Query 33283 CTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATG 33342 |||||| | || || ||||| || || || || || ||| | || |||||| | Sbjct 2179986 CTCCCACCCTCTGATACTCACCTACTTTCTTCTCAAAGAAGTTAATCTTGTCTTCCATTA 2180045 Query 33343 ATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAA-T 33401 | ||||| ||||| || ||||| | ||| || || ||| || |||| |||| | Sbjct 2180046 A-ATATTCTCCATAAAGTCAAATGAATTTTCTACTCTGAAAACCTTGCTAAAGCCCAGCT 2180104 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 ||| | | || || | ||| |||||||| ||||| ||||||| || || || Sbjct 2180105 TCATCA-TAAACCTGTGTGCCACGAATTCAATATACTGCTTCATCAAAGTGCAGTTTATC 2180163 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || ||| || || || | |||| | | | || || ||||| | | || ||||| Sbjct 2180164 CCAGTGAACTTCACAGGCAAAGCCTCCATGATGAACTCCTGTTCTAAGCTGACAGCATT- 2180222 Query 33522 GTTATAATAAATCTA--ACGGTTT-CTTCACTCGGTGGATGTAATAAATGTTTAAACATC 33578 | || |||| ||| || | | || || | | | | |||| | ||||| |||||| Sbjct 2180223 GATA-AATATTTCTTTTACTCTCTGCTCCAATGGTTTG-TGTAGCAGGTGTTTGAACATC 2180280 Query 33579 AAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTG 33638 | || || | || | | | |||||| ||||| ||||| | ||| | |||| | Sbjct 2180281 AGGCAAGCAGAGTCATAAAGTAAACCCTCATCTCTGCTAATAAGTTCACTGGAAAC--TT 2180338 Query 33639 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAG 33698 || || ||||| | || | || || | | | ||||| || | || || | | ||| Sbjct 2180339 AGGCCAGGCATCAATCCCTGTTTCTTGAACTAGAATATTGATTCAAAAGAAACATAGAAG 2180398 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCA 33755 ||| ||||||| || || ||||||| | || | |||| || | | | |||| Sbjct 2180399 AAGTTTCCTTCCACAGCCACAAAGGCTACAACACATTCTCTGTAGGTAGCTTCTTTGTCC 2180458 Query 33756 TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCA 33815 ||||| | || ||| || || || |||||| ||||||| ||||| |||||| Sbjct 2180459 CCAATCCAATGCAAGACCTAATTTGCTTTTTTCTTTACATAAGGCATTGTTTCAATGGCA 2180518 Query 33816 TTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATAC 33875 || |||||| | | |||| || |||||| ||||| || || | ||||||||| Sbjct 2180519 TTGAAGAGAAATTCCCTTTCTTTGAAATCTTT----TAAGTGTCAATAAGGAGACTATAC 2180574 Query 33876 ATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTA 33935 ||||| |||| | |||||| |||| || || || | |||||||| | | || ||| Sbjct 2180575 ATTTCACAATGTAGTTTTTCA-TGGCAATTTGGAAGTCATAGAAACAGTGAACTTCTGTA 2180633 Query 33936 ATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCT 33995 || || ||||| | |||| || | ||||||||||| ||||| |||||||| ||| Sbjct 2180634 ATTTGAACTTCCTGGCTTAATCACTCCACCAAATTTTCATTTACTATGCCATCACTTGCT 2180693 Query 33996 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA 34055 ||||| || || | ||| ||||||||| ||| || | | | || | | | Sbjct 2180694 GCAAAGAAATTCATAATATGAGACATAAAATATCATTCCTCAGATTTCAGGGCTTCCTAG 2180753 Query 34056 TCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 34115 | || || || || ||| |||| || | |||| |||| || | || ||||| Sbjct 2180754 TGCAGAATGTCCTTGGAAATAGCCACCTCCCCATATGTCAAAAAGGAACCTTCAGCCTTC 2180813 Query 34116 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAA 34162 ||| | || | ||| || ||||| ||| ||| || || | ||||| Sbjct 2180814 TTAGAAATCTGCCAAATATCATGGTATCTGATAGGAAAGAAGACAAA 2180860 >seq131 Length=5549739 Score = 178 bits (196), Expect = 2e-39 Identities = 266/376 (71%), Gaps = 4/376 (1%) Strand=Plus/Minus Query 33667 GCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||| ||||| || | || || || ||||||||||||||||| | | |||||||| | Sbjct 3233252 GCCAGAATATTGACACAAAAGAACCAGAAAAGAAGATTCCTTCCGCAGTGGCAAAGGCTA 3233193 Query 33727 TAA---GTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33783 || || | | || || | ||| ||||| | |||||||| || | Sbjct 3233192 AAACATGTTCTTGTAGGTAGCCT-CTTTGTTCCCAATCCAACTCAAGGCCCAATCTGCTT 3233134 Query 33784 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33843 || | || |||||||||||| |||| || ||||| ||||| | | |||| ||| || Sbjct 3233133 TCCTCTTCACACAAGGCATCCTTTCAATAGCATTGGAGAGAAATTCCCTTTCTTTAGAAT 3233074 Query 33844 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33903 |||||| ||||| || || | ||||| ||||||| ||||| |||||||| |||| | Sbjct 3233073 CTTTAATGTAAGTGTCAATAAGGAGACTCTACATTTTAGAATGCATGTTTTCTGTGGCAA 3233014 Query 33904 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTG 33963 ||| || || |||||||| | | || ||||| || |||||| | |||| ||| Sbjct 3233013 CCTGGAAGCCATAGAAACAGCCCACTTCTGTAATTTGAACTTCTTGGCTAAATTATTCCA 3232954 Query 33964 CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 34023 | ||||||||||| |||| |||||||| |||||||| || |||| ||| | ||||| Sbjct 3232953 CCAAATTTTCATTTGCTATGCCATCACTTGCTGCAAAGAAAGCCAGGACAAGCAATATAA 3232894 Query 34024 AATATTTTTCGTCTGG 34039 ||||| ||| || || Sbjct 3232893 AATATCGTTCCTCAGG 3232878 >seq58 Length=10378366 Score = 170 bits (188), Expect = 2e-37 Identities = 492/748 (66%), Gaps = 37/748 (5%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 ||||| || || || || ||| | || | || || || || ||||| || ||||||| | Sbjct 1968513 ACTCCAATCTTCTGATACTCAACTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGT 1968572 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || ||||| ||||| | |||| ||||| || || |||| | || | |||| | Sbjct 1968573 GAAATATTCTCCATAATGTCAAGTGGATTTTCTACTCTGAAAATCTCGATAGAGCCCAGT 1968632 Query 33402 T-CAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCAT 33460 | ||| | | | || ||||| || ||||| || | ||||||| || ||||| Sbjct 1968633 TTCAGCA-TAAGCCTGTCTGCTACAAATTCAATGCACTGCTTCATCAAAGAGCAGTTCAT 1968691 Query 33461 TCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATT 33520 || ||||| || || || | ||| || || || || ||||| || || | | | Sbjct 1968692 CCCAATGAGCTTCACAGGCAAGGCCTTGGTGAGGAACTCCTGTTCTATCC-TAACAAAAT 1968750 Query 33521 TGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAA 33580 || || | || | || | |||| | | | ||| |||| || | ||| ||||| | Sbjct 1968751 TGATA-ATTACTTTTATCCTCTTCTCC-CACAGTG--TGTAGCAAGTATTTGAACATTGA 1968806 Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 || || ||||| | || ||||| ||||| | ||| || ||||| ||||| Sbjct 1968807 GCAGGCAAAATCAC-----------TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAG 1968855 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG--GAAGCGAATGATCCGGAAAAG 33698 || ||||| || | | || ||||| || ||||| || || || || || |||||| Sbjct 1968856 ACCAGGCATCAGCCGTCATTTCTTAAGTCAGAATATATTGATGCAAAAGAACCAGAAAAG 1968915 Query 33699 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT 33758 |||||| |||| || ||||||||| | | ||||||| || | | | | Sbjct 1968916 AAGATTTCTTCCACATTAGCAAAGGCTACATCATGCTCTCCACAAATAGACTTTT----T 1968971 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 |||| || || |||| | ||||| || |||||||||||| |||| || |||| Sbjct 1968972 ATCCTGATT----CCAAATCTGTTTTCTTCTTCACACAAGGCATCATTTCAGTGCCATTG 1969027 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 |||| | | | |||||| || || |||| | || | || | | ||| || ||| Sbjct 1969028 AAGATAAATTCTTTTTCTTTGGAATTTTTA----ATGTGACAATAAGGAAACTGTATATT 1969083 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 | ||||| || ||| | ||||| || || ||||| |||||||| || || ||||| Sbjct 1969084 ACAGAATGTATTTTTCCTATGGCAATTTGGAATCCATAGAAACAGTGGGCTTCTGTAATT 1969143 Query 33939 TGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCA 33998 || | |||| | |||| | | | || ||||||| | ||| ||||||| |||| Sbjct 1969144 TGAATTTCTTGGCTAAATTGCTTCACCAATTTTTCATGTATTATGCCATCAC---CTGCT 1969200 Query 33999 AAAAACGCCAATACATGTTTTATAAAAT 34026 |||| |||| |||||| |||||||| Sbjct 1969201 AAAA--GCCAGAACATGTGCTATAAAAT 1969226 >seq3 Length=41493964 Score = 120 bits (132), Expect = 4e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||| | ||||||||| | || |||| | | || ||||| ||||||| ||| Sbjct 8287232 TTGAACTTCTTCTATATCTGGATAAAAAATCCGTTCACAAATGAGCTGTGCTATTCGATC 8287291 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || | ||||| | |||| | ||| ||| ||||| | | || || || ||||| Sbjct 8287292 ACCTTTTTTTACTTCAAACTTCTCTTTACCAAAATTAAACAACACAACACCAATATTTCC 8287351 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523 ||||||||||| ||||| ||||| |||||| ||| || | |||| | ||| || Sbjct 8287352 TCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTATTTTGCAGCCAGGCC 8287411 Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550 ||| | ||||||||||| |||||||| Sbjct 8287412 AGAACGTGGAGCTATTCTTCCATAGCA 8287438 >seq30 Length=14751797 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | Sbjct 820281 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATG 820340 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 820341 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 820400 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 820401 CTGTTTCTTACACCATA 820417 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || ||| |||||||| |||||||| |||||||||||||| | || ||||| || | || Sbjct 832087 CTCCACCCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCTCG 832146 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || ||||| |||||||| ||||| || | ||| |||||| | | || || ||||||| Sbjct 832147 CTGCTCCTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 832206 Query 63383 CGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||||| ||| || || | ||||||| || Sbjct 832207 AGGTTCCAGGTAAATAGCAAATGCTCCAGGACG 832239 Score = 102 bits (112), Expect = 1e-16 Identities = 149/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 62607 TTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAA 62666 ||||||| | || ||| |||| || |||||||| || | || || ||||| | ||| Sbjct 825634 TTACTGGAGAAC---CCT-CATAGGTTTCATATGGGCCATGCTCCTTTGCTAGGTCACAG 825689 Query 62667 CTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCT 62726 || || || | || || |||||||| ||||||||||||| |||||| | || || Sbjct 825690 CTGGCTTCCAGGGCTCCATAATAAATAGTTTCAAAGATCTGCTTATTCAATAACTGGGCC 825749 Query 62727 TCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCA 62786 || || || ||||| ||||| | | || ||||| || || || | || ||||| ||| Sbjct 825750 TCTGGACTCTCAAAAGGATATCTCATCAGGATAAAAGCATCTGCCAGACCCTGAACCCCA 825809 Query 62787 ATACCGATAGGTCTATGTCTCTTATTAGA 62815 || || ||||| | ||| | ||||| || Sbjct 825810 ATTCCAATAGGGCGATGGCGTTTATTTGA 825838 >seq64 Length=9676502 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||| || ||||| ||||| || ||||| || || || || | Sbjct 6351547 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 6351488 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| ||||| || || || |||||||||||||| || || |||||||||| Sbjct 6351487 TGAGCCAGAATATTGAAGCAAAAGAACCAGAAAAGAAGATTCCCTCCACAGCAGCAAAGG 6351428 Query 33724 C 33724 | Sbjct 6351427 C 6351427 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33843 TCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCC 33902 ||||||| ||||| || || | |||||||||||||| ||||| |||||||| ||||| Sbjct 6349677 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 6349618 Query 33903 ATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTC 33961 || || || || |||||||| | || || |||| || |||||| | |||||| || Sbjct 6349617 ATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAACTTGAACTTCTTGGCTAAATCGCTC 6349559 >seq2 Length=46620681 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || ||||| || || | ||| || ||||| ||||| || ||||| || || | ||| || Sbjct 41377775 TCATCTCTGCTGATCAGTTCATTGGAAAATGTGAGCCCAGGCATGAGACCTCTCTTCTTT 41377716 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724 ||||| ||||| | ||| || ||||| || ||||| |||||||| || ||||||||||| Sbjct 41377715 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCCACAGCAGCAAAGGC 41377657 >seq77 Length=8378111 Score = 95.1 bits (104), Expect = 2e-14 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 188376 TCGGATCTATAGGCTTGATTTTCGCATTGACTTTACACAGACATAAACATCCCCTGAATC 188435 |||||||| | || |||||||| |||||||| ||| |||||||||||||||| || || | Sbjct 4218550 TCGGATCTCTGGGTTTGATTTTTGCATTGACCTTAAACAGACATAAACATCCTCTTAACC 4218491 Query 188436 TGTACCTACTTTGTGGATTT 188455 ||||||| |||| ||||||| Sbjct 4218490 TGTACCTGCTTTTTGGATTT 4218471 Score = 91.5 bits (100), Expect = 2e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 |||||||| |||||||| ||||||||||||| ||||| ||||| || |||||||||||| Sbjct 4224939 TGCTCCTCAATCGAGGATGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 4224880 Query 188232 ATACGAATGG 188241 || ||||||| Sbjct 4224879 ATCCGAATGG 4224870 Score = 89.7 bits (98), Expect = 6e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||||||||| |||| ||| || | |||||||| | |||||||| |||| ||| Sbjct 4213610 GTTACTTTCTACGATGTATATATAATTCTGCAAGCTTTTGTACTGACTACTACAGTATTT 4213551 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 || | | | || | | |||||||||||| |||||||||||||| ||| ||| | |||| Sbjct 4213550 CTCGGTTTAACCATTTATACTCTACAATCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 4213492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629719324836240